DNAcopy: Results of segmenting a CNA data object

Description Usage Arguments Details Value

Description

The results of segmenting data from copy number array experiments from programs such as circular binary segmentation (CBS).

Usage

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## S3 method for class 'DNAcopy'
print(x, showSegRows=FALSE, ...)

Arguments

x

an object of class DNAcopy – output of segment.

showSegRows

option to show row numbers for the segment start and end. default is FALSE.

...

arguments to be passed onto print command called within.

Details

An object of class DNAcopy. There is a print method that prints the results in a tabular format. Each row gives the sample, the chromosome, the start and end map locations, the number of markers and the mean of each segment.

Value

data

The original CNA object which was the input for segment

ID

sample identifier.

chrom

the chromosome within the sample.

loc.start

the starting map location of the segment

loc.end

the ending map location of the segment

num.mark

the number of markers in the segment

data.type

the segment mean.

call

the call that produced the object.


DNAcopy documentation built on May 2, 2018, 2:57 a.m.