DaMiR.transpose: Matrix transposition and replacement of '.' and '-' special...

In DaMiRseq: Data Mining for RNA-seq data: normalization, feature selection and classification

Description

This function transposes matrix and replaces '.' and '-' special characters.

Usage

DaMiR.transpose(data)

Arguments

data	Matrix of normalized expression data, i.e. transformed counts by vst or rlog. A log2 transformed expression matrix is also accepted

Value

Normalized matrix in which each row is a sample and each column is a feature

Author(s)

Mattia Chiesa, Luca Piacentini

Examples

data(data_norm)
data.transposed <- DaMiR.transpose(assay(data_norm))

DaMiRseq documentation built on Nov. 8, 2020, 5:53 p.m.