import_txdb: Imports txdb data and converts it into format required for...

In DominoEffect: Identification and Annotation of Protein Hotspot Residues

Description

This function imports txdb data and converts into a data frame used in the DominoEffect package only extracting the required information from the txdb object.

Usage

  import_txdb(txdb_object)

Arguments

txdb_object

TxDB Object, e.g. from makeTxDbFromEnsembl

Value

Data frame that can be used in DominoEffect package.

Author(s)

Marija Buljan <[e-mail]> Peter Blattmann <[e-mail]>

Examples

#EnsTxDB <- makeTxDbFromEnsembl(organism="Homo sapiens", release=73, 
#                               server="ensembldb.ensembl.org")
#DominoData <- import_txdb(EnsTxDB)
#head(DominoData)

DominoEffect documentation built on Nov. 8, 2020, 5:46 p.m.