API for Doscheda
A DownStream Chemo-Proteomics Analysis Pipeline

Global functions
ChemoProtSet-class	Man page
DoschedaSet	Man page
boxplot,ChemoProtSet-method	Man page
corrPlot	Man page
corrPlot,ANY,ANY-method	Man page
corrPlot,ChemoProtSet-method	Man page
densityPlot	Man page
densityPlot,ANY,ANY-method	Man page
densityPlot,ChemoProtSet-method	Man page
doscheda	Man page
doscheda-package	Man page
doschedaApp	Man page Source code
doschedaData	Man page
fitModel	Man page
fitModel,ANY,ANY-method	Man page
fitModel,ChemoProtSet-method	Man page
fit_model	Source code
getDatasets	Man page
getDatasets,ANY,ANY-method	Man page
getDatasets,ChemoProtSet-method	Man page
getFinal	Man page
getFinal,ANY,ANY-method	Man page
getFinal,ChemoProtSet-method	Man page
getInput	Man page
getInput,ANY,ANY-method	Man page
getInput,ChemoProtSet-method	Man page
getNorm	Man page
getNorm,ANY,ANY-method	Man page
getNorm,ChemoProtSet-method	Man page
getParameters	Man page
getParameters,ANY,ANY-method	Man page
getParameters,ChemoProtSet-method	Man page
index_matrix	Source code
makeReport	Man page Source code
meanSdPlot	Man page
meanSdPlot,ANY,ANY-method	Man page
meanSdPlot,ChemoProtSet-method	Man page
normalize_data	Source code
panel_shadeNtext	Source code
pcaPlot	Man page
pcaPlot,ANY,ANY-method	Man page
pcaPlot,ChemoProtSet-method	Man page
peptide_match	Source code
plot.ChemoProtSet	Man page Source code
processedExample	Man page
removePeptides	Man page
removePeptides,ANY,ANY-method	Man page
removePeptides,ChemoProtSet-method	Man page
remove_peptides	Source code
replicatePlot	Man page
replicatePlot,ANY,ANY-method	Man page
replicatePlot,ChemoProtSet-method	Man page
runDoscheda	Man page Source code
runNormalisation	Man page
runNormalisation,ANY,ANY-method	Man page
runNormalisation,ChemoProtSet-method	Man page
setData	Man page
setData,ANY,ANY-method	Man page
setData,ChemoProtSet-method	Man page
setParameters	Man page
setParameters,ANY,ANY-method	Man page
setParameters,ChemoProtSet-method	Man page
shape_for_ggplot_perc	Source code
shape_for_ggplot_pred	Source code
standard_names	Source code
uniprotGene	Source code
volcanoPlot	Man page
volcanoPlot,ANY,ANY-method	Man page
volcanoPlot,ChemoProtSet-method	Man page