volcanoPlot-methods: Volcano plot for objects of class ChemoProtSet

In Doscheda: A DownStream Chemo-Proteomics Analysis Pipeline

Description

Volcano plots designed to be run on objects of class 'ChemoProtSet' when a linear model has been applied.

Usage

volcanoPlot(x, coefficient = "slope", avExprs = 0.2, pVal = 0.05, ...)

## S4 method for signature 'ChemoProtSet'
volcanoPlot(x, coefficient = "slope",
  avExprs = 0.2, pVal = 0.05, ...)

Arguments

x	object of class 'ChemoProtSet'
coefficient	coefficient of linear model to be plotted ('slope','intercept','quadratic')
avExprs	average expression cutoff
pVal	p-value cut-off
...	other plotting options

Value

volcano plot for objects of class ChemoProtSet

See Also

DoschedaSet

Examples

ex <- processedExample
ex <- runNormalisation(ex)
ex <- fitModel(ex)
volcanoPlot(ex)

Doscheda documentation built on Nov. 8, 2020, 5:37 p.m.