EBSEA: Exon Based Strategy for Expression Analysis of genes

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Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Author
Arfa Mehmood, Asta Laiho, Laura L. Elo
Date of publication
None
Maintainer
Arfa Mehmood <arfa.mehmood@utu.fi>
License
GPL-2
Version
1.2.0

View on Bioconductor

Man pages

EBSEA
Exon Based Startegy for Expression Analysis of genes
filterCounts
Filter Count Data
filterGenes
Filter Gene List
origCounts
Subset of Pasilla Dataset
visualizeGenes
Visualize Gene

Files in this package

EBSEA/DESCRIPTION
EBSEA/NAMESPACE
EBSEA/R
EBSEA/R/EBSEA.R
EBSEA/R/filterCounts.R
EBSEA/R/filterGenes.R
EBSEA/R/findScore.R
EBSEA/R/generateNullDistribution.R
EBSEA/R/normalizeData.R
EBSEA/R/visualizeGenes.R
EBSEA/build
EBSEA/build/vignette.rds
EBSEA/data
EBSEA/data/origCounts.rda
EBSEA/inst
EBSEA/inst/doc
EBSEA/inst/doc/EBSEA.R
EBSEA/inst/doc/EBSEA.Rnw
EBSEA/inst/doc/EBSEA.pdf
EBSEA/man
EBSEA/man/EBSEA.Rd
EBSEA/man/filterCounts.Rd
EBSEA/man/filterGenes.Rd
EBSEA/man/origCounts.Rd
EBSEA/man/visualizeGenes.Rd
EBSEA/vignettes
EBSEA/vignettes/EBSEA.Rnw