filterCounts: Filter Count Data

In EBSEA: Exon Based Strategy for Expression Analysis of genes

Description

Filtering of exons based on their expression levels

Usage

filterCounts(x, mean = 1, exonCount = 1)

Arguments

x	A numeric dataframe of exon counts across the samples. Exon number in format GeneName:Exonnumber should be indicated in the row name and sample names as column names.
mean	Exons with average count value across the dataset less than mean are filtered out. Default: 1
exonCount	After filtering the individual exons, only genes with at least the given number of exons remaining will be retained. Default: 1

Value

A dataframe of filtered counts of exons

Examples

data(exonCounts)
res <- filterCounts(exonCounts)

EBSEA documentation built on Nov. 8, 2020, 7:50 p.m.