EBarrays: Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification

EBarrays provides tools for the analysis of replicated/unreplicated microarray data.

Author
Ming Yuan, Michael Newton, Deepayan Sarkar and Christina Kendziorski
Date of publication
None
Maintainer
Ming Yuan <myuan@isye.gatech.edu>
License
GPL (>= 2)
Version
2.38.0

View on Bioconductor

Man pages

crit.fun
Find posterior probability threshold to control FDR
ebarraysFamily-class
Class of Families to be used in the EBarrays package
EBarrays-Internal
Internal EBarrays Functions
ebplots
Various plotting routines in the EBarrays package
emfit
Implements EM algorithm for gene expression mixture model
gould
A dataset of class matrix
postprob
Calculates posterior probabilities for expression patterns
utilities
Utility functions for the EBarrays package

Files in this package

EBarrays/ChangeLog
EBarrays/DESCRIPTION
EBarrays/NAMESPACE
EBarrays/R
EBarrays/R/ebfamily.R
EBarrays/R/ebpatterns.R
EBarrays/R/em.algorithm.R
EBarrays/R/function.R
EBarrays/R/lnnmv-functions.R
EBarrays/R/plots.R
EBarrays/build
EBarrays/build/vignette.rds
EBarrays/data
EBarrays/data/gould.rda
EBarrays/demo
EBarrays/demo/00Index
EBarrays/demo/ebarrays.R
EBarrays/inst
EBarrays/inst/doc
EBarrays/inst/doc/vignette.R
EBarrays/inst/doc/vignette.Rnw
EBarrays/inst/doc/vignette.pdf
EBarrays/man
EBarrays/man/EBarrays-Internal.Rd
EBarrays/man/crit.fun.Rd
EBarrays/man/ebarraysFamily-class.Rd
EBarrays/man/ebplots.Rd
EBarrays/man/emfit.Rd
EBarrays/man/gould.Rd
EBarrays/man/postprob.Rd
EBarrays/man/utilities.Rd
EBarrays/src
EBarrays/src/ebarrays.c
EBarrays/tests
EBarrays/tests/test.R
EBarrays/vignettes
EBarrays/vignettes/vignette.Rnw