EBarrays: Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification

EBarrays provides tools for the analysis of replicated/unreplicated microarray data.

AuthorMing Yuan, Michael Newton, Deepayan Sarkar and Christina Kendziorski
Date of publicationNone
MaintainerMing Yuan <myuan@isye.gatech.edu>
LicenseGPL (>= 2)
Version2.38.0

View on Bioconductor

Functions

checkCCV Man page
checkModel Man page
checkVarsMar Man page
checkVarsQQ Man page
coerce,character,ebarraysFamily-method Man page
crit.fun Man page
ebarraysEMfit-class Man page
ebarraysFamily-class Man page
ebarraysPatterns-class Man page
ebarraysPostProb-class Man page
eb.createFamilyGG Man page
eb.createFamilyLNN Man page
eb.createFamilyLNNMV Man page
ebPatterns Man page
ebplots Man page
emfit Man page
emfit0 Man page
emfit1 Man page
emfit2 Man page
emfit3 Man page
emfit,ExpressionSet,character,ebarraysPatterns-method Man page
emfit,ExpressionSet,ebarraysFamily,ebarraysPatterns-method Man page
emfit,matrix,character,ebarraysPatterns-method Man page
emfit,matrix,ebarraysFamily,ebarraysPatterns-method Man page
emfitmv Man page
gould Man page
plotCluster Man page
plot.ebarraysEMfit Man page
plotMarginal Man page
postprob Man page
postprob,ebarraysEMfit,ExpressionSet-method Man page
postprob,ebarraysEMfit,matrix-method Man page
show,ebarraysEMfit-method Man page
show,ebarraysFamily-method Man page
show,ebarraysPatterns-method Man page
show,ebarraysPostProb-method Man page
utilities Man page

Files

EBarrays/ChangeLog
EBarrays/DESCRIPTION
EBarrays/NAMESPACE
EBarrays/R
EBarrays/R/ebfamily.R EBarrays/R/ebpatterns.R EBarrays/R/em.algorithm.R EBarrays/R/function.R EBarrays/R/lnnmv-functions.R EBarrays/R/plots.R
EBarrays/build
EBarrays/build/vignette.rds
EBarrays/data
EBarrays/data/gould.rda
EBarrays/demo
EBarrays/demo/00Index
EBarrays/demo/ebarrays.R
EBarrays/inst
EBarrays/inst/doc
EBarrays/inst/doc/vignette.R
EBarrays/inst/doc/vignette.Rnw
EBarrays/inst/doc/vignette.pdf
EBarrays/man
EBarrays/man/EBarrays-Internal.Rd EBarrays/man/crit.fun.Rd EBarrays/man/ebarraysFamily-class.Rd EBarrays/man/ebplots.Rd EBarrays/man/emfit.Rd EBarrays/man/gould.Rd EBarrays/man/postprob.Rd EBarrays/man/utilities.Rd
EBarrays/src
EBarrays/src/ebarrays.c
EBarrays/tests
EBarrays/tests/test.R
EBarrays/vignettes
EBarrays/vignettes/vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.