EBcoexpress: EBcoexpress for Differential Co-Expression Analysis

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An Empirical Bayesian Approach to Differential Co-Expression Analysis at the Gene-Pair Level

Author
John A. Dawson
Date of publication
None
Maintainer
John A. Dawson <jadawson@wisc.edu>
License
GPL (>= 2)
Version
1.18.0

View on Bioconductor

Man pages

ebCoexpressMeta
A function for DC meta-analysis that combines individual...
ebCoexpressSeries
Functions to run single-study analyses
fiftyGenes
The fiftyGenes expression matrix
initializeHP
Initializing Hyperparameters for EM
makeMyD
A function to convert the X expression matrix into the D...
priorDiagnostic
Visual diagnostic for the EBcoexpress prior
rankMyGenes
A function to rank the genes by the number of DC pairs in...
showNetwork
A function for looking at the co-expression among a small...
showPair
A function for looking at a pair's differential co-expression
utilities
Basic utilities for the EBcoexpress package

Files in this package

EBcoexpress/DESCRIPTION
EBcoexpress/NAMESPACE
EBcoexpress/R
EBcoexpress/R/EBcoexpress.R
EBcoexpress/build
EBcoexpress/build/vignette.rds
EBcoexpress/data
EBcoexpress/data/fiftyGenes.RData
EBcoexpress/demo
EBcoexpress/demo/00Index
EBcoexpress/demo/EBcoexpress.R
EBcoexpress/inst
EBcoexpress/inst/doc
EBcoexpress/inst/doc/EBcoexpressVignette.R
EBcoexpress/inst/doc/EBcoexpressVignette.Rnw
EBcoexpress/inst/doc/EBcoexpressVignette.pdf
EBcoexpress/man
EBcoexpress/man/ebCoexpressMeta.Rd
EBcoexpress/man/ebCoexpressSeries.Rd
EBcoexpress/man/fiftyGenes.Rd
EBcoexpress/man/initializeHP.Rd
EBcoexpress/man/makeMyD.Rd
EBcoexpress/man/priorDiagnostic.Rd
EBcoexpress/man/rankMyGenes.Rd
EBcoexpress/man/showNetwork.Rd
EBcoexpress/man/showPair.Rd
EBcoexpress/man/utilities.Rd
EBcoexpress/src
EBcoexpress/src/EBcoexpress.c
EBcoexpress/vignettes
EBcoexpress/vignettes/EBcoexpressVignBib.bib
EBcoexpress/vignettes/EBcoexpressVignette.Rnw
EBcoexpress/vignettes/biom.bst