EBcoexpress: EBcoexpress for Differential Co-Expression Analysis
Version 1.20.0

An Empirical Bayesian Approach to Differential Co-Expression Analysis at the Gene-Pair Level

AuthorJohn A. Dawson
Bioconductor views Bayesian
Date of publicationNone
MaintainerJohn A. Dawson <jadawson@wisc.edu>
LicenseGPL (>= 2)
Version1.20.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("EBcoexpress")

Popular man pages

ebCoexpressMeta: A function for DC meta-analysis that combines individual...
ebCoexpressSeries: Functions to run single-study analyses
fiftyGenes: The fiftyGenes expression matrix
makeMyD: A function to convert the X expression matrix into the D...
rankMyGenes: A function to rank the genes by the number of DC pairs in...
showNetwork: A function for looking at the co-expression among a small...
utilities: Basic utilities for the EBcoexpress package
See all...

All man pages Function index File listing

Man pages

ebCoexpressMeta: A function for DC meta-analysis that combines individual...
ebCoexpressSeries: Functions to run single-study analyses
fiftyGenes: The fiftyGenes expression matrix
initializeHP: Initializing Hyperparameters for EM
makeMyD: A function to convert the X expression matrix into the D...
priorDiagnostic: Visual diagnostic for the EBcoexpress prior
rankMyGenes: A function to rank the genes by the number of DC pairs in...
showNetwork: A function for looking at the co-expression among a small...
showPair: A function for looking at a pair's differential co-expression
utilities: Basic utilities for the EBcoexpress package

Functions

bwmc Man page Source code
crit.fun Man page Source code
ebCoexpressFullTCAECM Man page Source code
ebCoexpressMeta Man page Source code
ebCoexpressOneStep Man page Source code
ebCoexpressZeroStep Man page Source code
fiftyGenes Man page
initializeHP Man page Source code
makeMyD Man page Source code
priorDiagnostic Man page Source code
rankMyGenes Man page Source code
showNetwork Man page Source code
showPair Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/EBcoexpress.R
build
build/vignette.rds
data
data/fiftyGenes.RData
demo
demo/00Index
demo/EBcoexpress.R
inst
inst/doc
inst/doc/EBcoexpressVignette.R
inst/doc/EBcoexpressVignette.Rnw
inst/doc/EBcoexpressVignette.pdf
man
man/ebCoexpressMeta.Rd
man/ebCoexpressSeries.Rd
man/fiftyGenes.Rd
man/initializeHP.Rd
man/makeMyD.Rd
man/priorDiagnostic.Rd
man/rankMyGenes.Rd
man/showNetwork.Rd
man/showPair.Rd
man/utilities.Rd
src
src/EBcoexpress.c
vignettes
vignettes/EBcoexpressVignBib.bib
vignettes/EBcoexpressVignette.Rnw
vignettes/biom.bst
EBcoexpress documentation built on May 20, 2017, 10:08 p.m.

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