API for EDASeq
Exploratory Data Analysis and Normalization for RNA-Seq

Global functions
.autoDetectGeneIdType	Source code
.availableOrgPkgs	Source code
.gcLoess	Source code
.gcQuant	Source code
.getOrgIdType	Source code
.isAvailable	Source code
.org2pkg	Source code
.supportedOrganisms	Source code
EDASeq	Man page
EDASeq-package	Man page
MDPlot	Man page
MDPlot,SeqExpressionSet,numeric-method	Man page
MDPlot,matrix,numeric-method	Man page
MDPlot-methods	Man page
SeqExpressionSet-class	Man page
barplot,BamFile-method	Man page
barplot,BamFileList-method	Man page
barplot,FastqFileList-method	Man page
barplot-methods	Man page
betweenLaneNormalization	Man page
betweenLaneNormalization,SeqExpressionSet-method	Man page
betweenLaneNormalization,matrix-method	Man page
betweenLaneNormalization-methods	Man page
biasBoxplot	Man page
biasBoxplot,numeric,numeric,numeric-method	Man page
biasBoxplot,numeric,numeric-method	Man page
biasBoxplot-methods	Man page
biasPlot	Man page
biasPlot,SeqExpressionSet,character-method	Man page
biasPlot,matrix,numeric-method	Man page
biasPlot-methods	Man page
boxplot,FastqQuality-method	Man page
boxplot,SeqExpressionSet-method	Man page
boxplot-methods	Man page
counts,SeqExpressionSet-method	Man page
counts<-,SeqExpressionSet-method	Man page
exprs,SeqExpressionSet-method	Man page
exprs<-,SeqExpressionSet,ANY-method	Man page
getGeneLengthAndGCContent	Man page Source code
initialize,SeqExpressionSet-method	Man page
meanVarPlot	Man page
meanVarPlot,SeqExpressionSet-method	Man page
meanVarPlot-methods	Man page
newSeqExpressionSet	Man page Source code
normCounts	Man page
normCounts,SeqExpressionSet-method	Man page
normCounts<-	Man page
normCounts<-,SeqExpressionSet,ANY-method	Man page
normCounts<-,SeqExpressionSet-method	Man page
offst	Man page
offst,SeqExpressionSet-method	Man page
offst<-	Man page
offst<-,SeqExpressionSet,ANY-method	Man page
offst<-,SeqExpressionSet-method	Man page
plot,BamFileList,FastqFileList-method	Man page
plot-methods	Man page
plotNtFrequency	Man page
plotNtFrequency,BamFile-method	Man page
plotNtFrequency,ShortRead-method	Man page
plotNtFrequency-methods	Man page
plotPCA	Man page
plotPCA,SeqExpressionSet-method	Man page
plotPCA,matrix-method	Man page
plotPCA-methods	Man page
plotQuality	Man page
plotQuality,BamFile-method	Man page
plotQuality,BamFileList-method	Man page
plotQuality,FastqFileList-method	Man page
plotQuality-methods	Man page
plotRLE	Man page
plotRLE,SeqExpressionSet-method	Man page
plotRLE,matrix-method	Man page
plotRLE-methods	Man page
withinLaneNormalization	Man page
withinLaneNormalization,SeqExpressionSet,character-method	Man page
withinLaneNormalization,matrix,numeric-method	Man page
withinLaneNormalization-methods	Man page
yeastGC	Man page
yeastLength	Man page