read_celltype_data: Read single cell transcriptome data

In EWCE: Expression Weighted Celltype Enrichment

Description

read_celltype_data loads single cell transcriptome data and determines for each gene, the proportion of expression found in each celltype

Usage

read_celltype_data(path)

Arguments

path	Path to the file containing the single cell transcriptome data

Value

A list containing three data frames:

• all_scts: stores the average value for each subcell type found across cells

• cell_dists: proportion of expression for each gene in each cell type

• subcell_dists: proportion of expression for each gene in each subcell type

Examples

celltype_data = read_celltype_data("expression_mRNA_17-Aug-2014.txt")

EWCE documentation built on May 31, 2017, 3:16 p.m.