API for ExCluster
ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition
| Global functions | |
|---|---|
| Calc.effect.size | Source code |
| CollapseExons | Source code |
| Compare_HC_Distances | Source code |
| Cutree_SD.Index | Source code |
| Determine_HC_Distance | Source code |
| EstNullHypo | Source code |
| ExClust_compute_stats | Source code |
| ExClust_main_function | Source code |
| ExCluster | Man page Source code |
| FDRcalc | Source code |
| GFF_convert | Man page Source code |
| GRangesFromExClustResults | Man page Source code |
| GRangesFromGFF | Source code |
| GRangesToGFF | Source code |
| Generate_ES_dists | Source code |
| IndexGeneStartStop | Source code |
| Permuted_ES_nullhypo | Source code |
| SD.Average.scattering | Source code |
| SD.Distance | Source code |
| SD.Index2 | Source code |
| centers | Source code |
| gm_mean | Source code |
| normalizeLibrarySizes | Source code |
| parseAmbiguousReads | Source code |
| parseGeneIDs | Source code |
| plotExonlog2FC | Man page Source code |
| processCounts | Man page Source code |
| reformat_GFF3 | Source code |
| reformat_GTF | Source code |
| testBMplot | Source code |
| testPNGplot | Source code |
