API for ExCluster
ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition

Global functions
Calc.effect.size Source code
CollapseExons Source code
Compare_HC_Distances Source code
Cutree_SD.Index Source code
Determine_HC_Distance Source code
EstNullHypo Source code
ExClust_compute_stats Source code
ExClust_main_function Source code
ExCluster Man page Source code
FDRcalc Source code
GFF_convert Man page Source code
GRangesFromExClustResults Man page Source code
GRangesFromGFF Source code
GRangesToGFF Source code
Generate_ES_dists Source code
IndexGeneStartStop Source code
Permuted_ES_nullhypo Source code
SD.Average.scattering Source code
SD.Distance Source code
SD.Index2 Source code
centers Source code
gm_mean Source code
normalizeLibrarySizes Source code
parseAmbiguousReads Source code
parseGeneIDs Source code
plotExonlog2FC Man page Source code
processCounts Man page Source code
reformat_GFF3 Source code
reformat_GTF Source code
testBMplot Source code
testPNGplot Source code
ExCluster documentation built on May 6, 2019, 2:29 a.m.