ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition

Global functions | |
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Calc.effect.size | Source code |

CollapseExons | Source code |

Compare_HC_Distances | Source code |

Cutree_SD.Index | Source code |

Determine_HC_Distance | Source code |

EstNullHypo | Source code |

ExClust_compute_stats | Source code |

ExClust_main_function | Source code |

ExCluster | Man page Source code |

FDRcalc | Source code |

GFF_convert | Man page Source code |

GRangesFromExClustResults | Man page Source code |

GRangesFromGFF | Source code |

GRangesToGFF | Source code |

Generate_ES_dists | Source code |

IndexGeneStartStop | Source code |

Permuted_ES_nullhypo | Source code |

SD.Average.scattering | Source code |

SD.Distance | Source code |

SD.Index2 | Source code |

centers | Source code |

gm_mean | Source code |

normalizeLibrarySizes | Source code |

parseAmbiguousReads | Source code |

parseGeneIDs | Source code |

plotExonlog2FC | Man page Source code |

processCounts | Man page Source code |

reformat_GFF3 | Source code |

reformat_GTF | Source code |

testBMplot | Source code |

testPNGplot | Source code |

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