GEOquery: Get data from NCBI Gene Expression Omnibus (GEO)

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

AuthorSean Davis <sdavis2@mail.nih.gov>
Date of publicationNone
MaintainerSean Davis <sdavis2@mail.nih.gov>
LicenseGPL-2
Version2.40.0
https://github.com/seandavi/GEOquery

View on Bioconductor

Functions

Accession Man page
Accession,GEOData-method Man page
Accession,GEODataTable-method Man page
Columns Man page
Columns,GEOData-method Man page
Columns,GEODataTable-method Man page
dataTable Man page
dataTable,GEOData-method Man page
dataTable,GEODataTable-method Man page
GDS2eSet Man page
GDS2MA Man page
GDS-class Man page
GEOData-class Man page
GEODataTable-class Man page
getGEO Man page
getGEOfile Man page
getGEOSuppFiles Man page
getGSEDataTables Man page
GPL-class Man page
GPLList Man page
GPLList,GSE-method Man page
GSE-class Man page
GSM-class Man page
GSMList Man page
GSMList,GSE-method Man page
gunzip Man page
Meta Man page
Meta,GEOData-method Man page
Meta,GEODataTable-method Man page
Meta,GSE-method Man page
parseGDS Man page
parseGEO Man page
parseGPL Man page
parseGSE Man page
parseGSM Man page
show,GEOData-method Man page
show,GEODataTable-method Man page
Table Man page
Table,GEOData-method Man page
Table,GEODataTable-method Man page

Files

GEOquery/DESCRIPTION
GEOquery/NAMESPACE
GEOquery/NEWS
GEOquery/R
GEOquery/R/GDS2MA.R GEOquery/R/classes.R GEOquery/R/fileOpen.R GEOquery/R/getGEO.R GEOquery/R/getGEOSuppFiles.R GEOquery/R/getGEOfile.R GEOquery/R/getGSEDataTables.R GEOquery/R/parseGEO.R GEOquery/R/zzz.R
GEOquery/README.md
GEOquery/build
GEOquery/build/vignette.rds
GEOquery/inst
GEOquery/inst/CITATION
GEOquery/inst/doc
GEOquery/inst/doc/GEOquery.R
GEOquery/inst/doc/GEOquery.Rmd
GEOquery/inst/doc/GEOquery.html
GEOquery/inst/extdata
GEOquery/inst/extdata/GDS507.soft.gz
GEOquery/inst/extdata/GPL97.annot.gz
GEOquery/inst/extdata/GSE781_family.soft.gz
GEOquery/inst/extdata/GSM11805.txt.gz
GEOquery/inst/unitTests
GEOquery/inst/unitTests/test_CaseMismatchedIDsGSE.R
GEOquery/inst/unitTests/test_EmptyGSE.R
GEOquery/inst/unitTests/test_GDSConversions.R
GEOquery/inst/unitTests/test_GenericGDS.R
GEOquery/inst/unitTests/test_GenericGPL.R
GEOquery/inst/unitTests/test_GenericGSM.R
GEOquery/inst/unitTests/test_QuotedGPL.R
GEOquery/inst/unitTests/test_SOFTFormatGSE.R
GEOquery/inst/unitTests/test_ShortGPL.R
GEOquery/inst/unitTests/test_ShortGSE.R
GEOquery/inst/unitTests/test_SingleSampleGSE.R
GEOquery/inst/unitTests/test_SuppFileSupport.R
GEOquery/inst/unitTests/test_getGPLFALSE.R
GEOquery/man
GEOquery/man/GDS-class.Rd GEOquery/man/GDS2MA.Rd GEOquery/man/GEOData-class.Rd GEOquery/man/GEODataTable-class.Rd GEOquery/man/GPL-class.Rd GEOquery/man/GSE-class.Rd GEOquery/man/GSM-class.Rd GEOquery/man/dataTable.Rd GEOquery/man/getGEO.Rd GEOquery/man/getGEOSuppFiles.Rd GEOquery/man/getGEOfile.Rd GEOquery/man/getGSEDataTables.Rd GEOquery/man/gunzip.Rd GEOquery/man/parseGEO.Rd
GEOquery/tests
GEOquery/tests/runTests.R
GEOquery/vignettes
GEOquery/vignettes/GEOquery.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.