GEOquery: Get data from NCBI Gene Expression Omnibus (GEO)

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

AuthorSean Davis <sdavis2@mail.nih.gov>
Date of publicationNone
MaintainerSean Davis <sdavis2@mail.nih.gov>
LicenseGPL-2
Version2.40.0
https://github.com/seandavi/GEOquery

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Files in this package

GEOquery/DESCRIPTION
GEOquery/NAMESPACE
GEOquery/NEWS
GEOquery/R
GEOquery/R/GDS2MA.R GEOquery/R/classes.R GEOquery/R/fileOpen.R GEOquery/R/getGEO.R GEOquery/R/getGEOSuppFiles.R GEOquery/R/getGEOfile.R GEOquery/R/getGSEDataTables.R GEOquery/R/parseGEO.R GEOquery/R/zzz.R
GEOquery/README.md
GEOquery/build
GEOquery/build/vignette.rds
GEOquery/inst
GEOquery/inst/CITATION
GEOquery/inst/doc
GEOquery/inst/doc/GEOquery.R
GEOquery/inst/doc/GEOquery.Rmd
GEOquery/inst/doc/GEOquery.html
GEOquery/inst/extdata
GEOquery/inst/extdata/GDS507.soft.gz
GEOquery/inst/extdata/GPL97.annot.gz
GEOquery/inst/extdata/GSE781_family.soft.gz
GEOquery/inst/extdata/GSM11805.txt.gz
GEOquery/inst/unitTests
GEOquery/inst/unitTests/test_CaseMismatchedIDsGSE.R
GEOquery/inst/unitTests/test_EmptyGSE.R
GEOquery/inst/unitTests/test_GDSConversions.R
GEOquery/inst/unitTests/test_GenericGDS.R
GEOquery/inst/unitTests/test_GenericGPL.R
GEOquery/inst/unitTests/test_GenericGSM.R
GEOquery/inst/unitTests/test_QuotedGPL.R
GEOquery/inst/unitTests/test_SOFTFormatGSE.R
GEOquery/inst/unitTests/test_ShortGPL.R
GEOquery/inst/unitTests/test_ShortGSE.R
GEOquery/inst/unitTests/test_SingleSampleGSE.R
GEOquery/inst/unitTests/test_SuppFileSupport.R
GEOquery/inst/unitTests/test_getGPLFALSE.R
GEOquery/man
GEOquery/man/GDS-class.Rd GEOquery/man/GDS2MA.Rd GEOquery/man/GEOData-class.Rd GEOquery/man/GEODataTable-class.Rd GEOquery/man/GPL-class.Rd GEOquery/man/GSE-class.Rd GEOquery/man/GSM-class.Rd GEOquery/man/dataTable.Rd GEOquery/man/getGEO.Rd GEOquery/man/getGEOSuppFiles.Rd GEOquery/man/getGEOfile.Rd GEOquery/man/getGSEDataTables.Rd GEOquery/man/gunzip.Rd GEOquery/man/parseGEO.Rd
GEOquery/tests
GEOquery/tests/runTests.R
GEOquery/vignettes
GEOquery/vignettes/GEOquery.Rmd

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