Constructing gene regulatory networks from expression data through functional module inference

build_module | Fit a regression tree. |

build_moduleR | Build regression tree. |

build_moduleR_heuristic | Build regression tree with splits are detemined by K-means... |

build_split_table | Build split table by K-means heuristicly. |

calc_likelihood_score | Calculate Gaussian Likelihood score. |

extract_edges | Extract the network from the gnet result |

get_correlation_list | Calculate correlation within each group. |

gnet | Run GNET2 |

kneepointDetection | Knee point detection. |

plot_gene_group | Plot a module |

plot_group_correlation | Plot the correlation of each group |

plot_tree | Plot the regression tree. |

save_gnet | Save the GNET2 results |

similarity_score | Compute the similarity from a predefined condition group |

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