Description Usage Format Value Source
This is an example dataset corresponding to Case C.
The dataset is equivalent to that of Case A, but in a different form.
The data was generated by the python script "generate_data.py" found in
the "inst/scripts/" directory.
This object is meant to be used as the "inputData" argument for
the GRfit
function when "case" is equal to "C".
The input data for "Case C" of the GRfit
function must be in
this format with columns named "concentration", "cell_count",
and "time" as well as columns for other key
variables. The columns "cell_line", "agent", "perturbation", and
"replicate", are simply examples of these key variables. It is not necessary
that your input data frame include these exact column names or the same
number of columns.
1 |
A data frame with 1352 rows and 7 variables:
cell_line: the cell-line used (MCF10A, MCF7, BT20)
agent: the drug used (-, drugA, drugB, drugC, drugD)
pertubation: an example of another key variable (e.g different media, a co-treatment, etc.) (0, 1)
replicate: replicate number, (1, 2, 3)
time: time of assay measured in hours (0, 48, 72)
concentration: concentration of the perturbagen on which dose-response curves will be evaluated (not log transformed)
cell_count: measure of cell number or a surrogate of the number of cells.
An example dataset in the form of "Case C" generated for use with
GRfit
inst/scripts/generate_data.py
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