GRgetValues: GR values

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/GRaccessors.R

Description

Given a SummarizedExperiment object created by GRfit, this function returns a table of the original data (in the form of "Case A") with columns for GR values and relative cell counts.

Usage

1
GRgetValues(fitData)

Arguments

fitData

a SummarizedExperiment object, generated by the GRfit function.

Details

Given a SummarizedExperiment object created by GRfit, this function returns a table of the original data (in the form of "Case A") with columns for GR values and relative cell counts. This is simply a convenient accessor function, equivalent to as.data.frame(metadata(fitData)[[1]]).

Value

A table with GR values and relative cell counts

Author(s)

Nicholas Clark

See Also

To create the object needed for this function, see GRfit.

Examples

1
2
3
4
5
6
7
8
9
# Load Case A (example 1) input
data("inputCaseA")
head(inputCaseA)
# Run GRfit function with case = "A"
output1 = GRfit(inputData = inputCaseA,
groupingVariables = c('cell_line','agent'))
GRvalues = GRgetValues(output1)
head(GRvalues)
## Not run: View(GRvalues)

GRmetrics documentation built on Nov. 8, 2020, 8:06 p.m.