GSEAlm: Linear Model Toolset for Gene Set Enrichment Analysis

Models and methods for fitting linear models to gene expression data, together with tools for computing and using various regression diagnostics.

Author
Assaf Oron, Robert Gentleman (with contributions from S. Falcon and Z. Jiang)
Date of publication
None
Maintainer
Assaf Oron <assaf@uw.edu>
License
Artistic-2.0
Version
1.34.0

View on Bioconductor

Man pages

dfbetasPerGene
Linear-Model Deletion Diagnostics for Gene Expression (or...
getResidPerGene
Row-by-Row Linear-Model Residuals for Gene Expression (or...
gsealmPerm
Nonparametric inference for linear models in...
GSNormalize
Aggregating and calculating expression statistics by Gene Set
lmPerGene
Fit linear model for each gene
resplot
Simple Graphical Summaries for Gene Set Enrichment Analysis...

Files in this package

GSEAlm/DESCRIPTION
GSEAlm/NAMESPACE
GSEAlm/R
GSEAlm/R/lm2.R
GSEAlm/R/lm3.R
GSEAlm/R/lm4.R
GSEAlm/R/lmpergene.R
GSEAlm/build
GSEAlm/build/vignette.rds
GSEAlm/inst
GSEAlm/inst/doc
GSEAlm/inst/doc/GSEAlm.R
GSEAlm/inst/doc/GSEAlm.Rnw
GSEAlm/inst/doc/GSEAlm.pdf
GSEAlm/man
GSEAlm/man/GSNormalize.Rd
GSEAlm/man/dfbetasPerGene.Rd
GSEAlm/man/getResidPerGene.Rd
GSEAlm/man/gsealmPerm.Rd
GSEAlm/man/lmPerGene.Rd
GSEAlm/man/resplot.Rd
GSEAlm/vignettes
GSEAlm/vignettes/GSEAlm.Rnw
GSEAlm/vignettes/alltt.sty
GSEAlm/vignettes/array.sty
GSEAlm/vignettes/cat.bib
GSEAlm/vignettes/chngpage.sty
GSEAlm/vignettes/color.sty
GSEAlm/vignettes/crop.cfg
GSEAlm/vignettes/crop.sty
GSEAlm/vignettes/float.sty
GSEAlm/vignettes/flushend.sty
GSEAlm/vignettes/graphicx.sty
GSEAlm/vignettes/landscap.sty
GSEAlm/vignettes/ly1phv.fd
GSEAlm/vignettes/natbib.bst
GSEAlm/vignettes/natbib.sty
GSEAlm/vignettes/rmgreek.sty
GSEAlm/vignettes/stfloats.sty
GSEAlm/vignettes/times.sty
GSEAlm/vignettes/url.sty