GSEAlm: Linear Model Toolset for Gene Set Enrichment Analysis
Version 1.36.0

Models and methods for fitting linear models to gene expression data, together with tools for computing and using various regression diagnostics.

AuthorAssaf Oron, Robert Gentleman (with contributions from S. Falcon and Z. Jiang)
Bioconductor views Microarray
Date of publicationNone
MaintainerAssaf Oron <assaf@uw.edu>
LicenseArtistic-2.0
Version1.36.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GSEAlm")

Popular man pages

dfbetasPerGene: Linear-Model Deletion Diagnostics for Gene Expression (or...
getResidPerGene: Row-by-Row Linear-Model Residuals for Gene Expression (or...
gsealmPerm: Nonparametric inference for linear models in...
GSNormalize: Aggregating and calculating expression statistics by Gene Set
lmPerGene: Fit linear model for each gene
resplot: Simple Graphical Summaries for Gene Set Enrichment Analysis...
See all...

All man pages Function index File listing

Man pages

dfbetasPerGene: Linear-Model Deletion Diagnostics for Gene Expression (or...
getResidPerGene: Row-by-Row Linear-Model Residuals for Gene Expression (or...
gsealmPerm: Nonparametric inference for linear models in...
GSNormalize: Aggregating and calculating expression statistics by Gene Set
lmPerGene: Fit linear model for each gene
resplot: Simple Graphical Summaries for Gene Set Enrichment Analysis...

Functions

CooksDPerGene Man page Source code
GSNormalize Man page Source code
Leverage Man page Source code
dfbetasPerGene Man page Source code
dffitsPerGene Man page Source code
dumminc Source code
getResidPerGene Man page Source code
gsealmPerm Man page Source code
identity Man page
lmPerGene Man page Source code
mnDiffPlot Man page Source code
num.extreme Source code
num.high Source code
num.low Source code
num.positive Source code
one Man page Source code
pvalFromPermMat Source code
resplot Man page Source code
restrip Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/lm2.R
R/lm3.R
R/lm4.R
R/lmpergene.R
build
build/vignette.rds
inst
inst/doc
inst/doc/GSEAlm.R
inst/doc/GSEAlm.Rnw
inst/doc/GSEAlm.pdf
man
man/GSNormalize.Rd
man/dfbetasPerGene.Rd
man/getResidPerGene.Rd
man/gsealmPerm.Rd
man/lmPerGene.Rd
man/resplot.Rd
vignettes
vignettes/GSEAlm.Rnw
vignettes/alltt.sty
vignettes/array.sty
vignettes/cat.bib
vignettes/chngpage.sty
vignettes/color.sty
vignettes/crop.cfg
vignettes/crop.sty
vignettes/float.sty
vignettes/flushend.sty
vignettes/graphicx.sty
vignettes/landscap.sty
vignettes/ly1phv.fd
vignettes/natbib.bst
vignettes/natbib.sty
vignettes/rmgreek.sty
vignettes/stfloats.sty
vignettes/times.sty
vignettes/url.sty
GSEAlm documentation built on May 20, 2017, 10:42 p.m.

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