clust_group_terms: clust_group_terms

Description Usage Arguments Value Examples

View source: R/clust_group_terms.R

Description

Takes the output of clust_groups, a data frame , and process it to obtain the enrichment of terms in gene sets names within each cluster. The output is used in the functions gm_enrichterms and gm_enrichreport.

Usage

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Arguments

cg

A data frame output from the GSEAmining cluster_groups function.

Value

A tibble with four variables (Cluster, Enrichment, monogram, n).

Examples

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data(genesets_sel)
gs.cl <- gm_clust(genesets_sel)
clust.groups <- clust_groups(genesets_sel, gs.cl)
clust.groups.wordcloud <- clust_group_terms(clust.groups)

GSEAmining documentation built on Nov. 8, 2020, 5:52 p.m.