clust_groups: clust_groups

In GSEAmining: Make Biological Sense of Gene Set Enrichment Analysis Outputs

Description

Takes the output of gm_clust, which is an hclust class object, and returns a data frame that will be used in the rest of GSEAmining functions gm_enrichreport, gm_enrichterms and gm_enrichcores.

Usage

clust_groups(df, hc)

Arguments

df	Data frame that contains at least three columns: an ID column for the gene set names, a NES column with the normalized enrichment score and a core_enrichment column containing the genes in the leading edge of each gene set separated by '/'.
hc	The output of gm_clust, which is an hclust class object.

Value

A data.frame containing the cluster each gene set belongs to.

Examples

data(genesets_sel)
gs.cl <- gm_clust(genesets_sel)
clust.groups <- clust_groups(genesets_sel, gs.cl)

GSEAmining documentation built on Nov. 8, 2020, 5:52 p.m.