R based Genetic algorithm for gene expression optimization by considering both mRNA secondary structure and codon usage bias, GeneGA includes the information of highly expressed genes of almost 200 genomes. Meanwhile, Vienna RNA Package is needed to ensure GeneGA to function properly.
|Author||Zhenpeng Li and Haixiu Huang|
|Date of publication||None|
|Maintainer||Zhenpeng Li <email@example.com>|
|License||GPL version 2|
GeneCodon: Optimizing the codon usage of gene by replacing less usage...
GeneFoldGA: the function optimizes gene merely considering mRNA secondary...
GeneFoldGA-class: Class "GeneFoldGA"
GeneGA: the function optimizes gene expression based on both mRNA...
GeneGA-class: Class "GeneGA"
GeneGA-package: Designing gene based on mRNA secondary structure and codon...
plotGeneGA-methods: plotGeneGA methods of GeneGA and GeneFoldGA objects
wSet: Codon Adaptation Index (CAI) w tables