GeneGA: Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm

R based Genetic algorithm for gene expression optimization by considering both mRNA secondary structure and codon usage bias, GeneGA includes the information of highly expressed genes of almost 200 genomes. Meanwhile, Vienna RNA Package is needed to ensure GeneGA to function properly.

AuthorZhenpeng Li and Haixiu Huang
Date of publicationNone
MaintainerZhenpeng Li <zpli21@gmail.com>
LicenseGPL version 2
Version1.24.0
http://www.tbi.univie.ac.at/~ivo/RNA/

View on Bioconductor

Files

GeneGA/.BBSoptions
GeneGA/DESCRIPTION
GeneGA/NAMESPACE
GeneGA/R
GeneGA/R/GeneCodon.R GeneGA/R/GeneFoldGA.R GeneGA/R/GeneGA-internal.R GeneGA/R/GeneGA.R GeneGA/R/GeneGA_internal.R GeneGA/R/evaluationFunction.R
GeneGA/build
GeneGA/build/vignette.rds
GeneGA/data
GeneGA/data/wSet.rda
GeneGA/inst
GeneGA/inst/doc
GeneGA/inst/doc/GeneGA.R
GeneGA/inst/doc/GeneGA.Rnw
GeneGA/inst/doc/GeneGA.pdf
GeneGA/inst/sequence
GeneGA/inst/sequence/EGFP.fasta
GeneGA/man
GeneGA/man/GeneCodon.Rd GeneGA/man/GeneFoldGA-class.Rd GeneGA/man/GeneFoldGA.Rd GeneGA/man/GeneGA-class.Rd GeneGA/man/GeneGA-package.Rd GeneGA/man/GeneGA.Rd GeneGA/man/plotGeneGA-methods.Rd GeneGA/man/wSet.Rd
GeneGA/vignettes
GeneGA/vignettes/GeneGA.Rnw
GeneGA/vignettes/GeneGA.bib

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