GeneOverlap: Test and visualize gene overlaps

Test two sets of gene lists and visualize the results.

AuthorLi Shen, Mount Sinai <shenli.sam@gmail.com>
Date of publicationNone
MaintainerLi Shen, Mount Sinai <shenli.sam@gmail.com>
LicenseGPL-3
Version1.10.0
http://shenlab-sinai.github.io/shenlab-sinai/

View on Bioconductor

Functions

[ Man page
drawHeatmap Man page
drawHeatmap,GeneOverlapMatrix-method Man page
GeneOverlap-class Man page
GeneOverlapMatrix-class Man page
[,GeneOverlapMatrix-method Man page
GeneOverlap-package Man page
getContbl Man page
getContbl,GeneOverlap-method Man page
getGenomeSize Man page
getGenomeSize,GeneOverlap-method Man page
getGsetA Man page
getGsetA,GeneOverlapMatrix-method Man page
getGsetB Man page
getGsetB,GeneOverlapMatrix-method Man page
getIntersection Man page
getIntersection,GeneOverlap-method Man page
getJaccard Man page
getJaccard,GeneOverlap-method Man page
getListA Man page
getListA,GeneOverlap-method Man page
getListB Man page
getListB,GeneOverlap-method Man page
getMatrix Man page
getMatrix,GeneOverlapMatrix-method Man page
getNestedList Man page
getNestedList,GeneOverlapMatrix-method Man page
getOddsRatio Man page
getOddsRatio,GeneOverlap-method Man page
getPval Man page
getPval,GeneOverlap-method Man page
getSelfCompare Man page
getSelfCompare,GeneOverlapMatrix-method Man page
getTested Man page
getTested,GeneOverlap-method Man page
getUnion Man page
getUnion,GeneOverlap-method Man page
gs.RNASeq Man page
hESC.ChIPSeq.list Man page
hESC.RNASeq.list Man page
newGeneOverlap Man page
newGOM Man page
print,GeneOverlapMatrix-method Man page
print,GeneOverlap-method Man page
setGenomeSize<- Man page
setGenomeSize<-,GeneOverlap-method Man page
setListA<- Man page
setListA<-,GeneOverlap-method Man page
setListB<- Man page
setListB<-,GeneOverlap-method Man page
show,GeneOverlapMatrix-method Man page
show,GeneOverlap-method Man page
testGeneOverlap Man page
testGeneOverlap,GeneOverlap-method Man page

Files

GeneOverlap/DESCRIPTION
GeneOverlap/NAMESPACE
GeneOverlap/R
GeneOverlap/R/AllClasses.R GeneOverlap/R/AllGenerics.R GeneOverlap/R/GeneOverlap-accessors.R GeneOverlap/R/GeneOverlap-methods.R GeneOverlap/R/GeneOverlapMatrix-accessors.R GeneOverlap/R/GeneOverlapMatrix-methods.R
GeneOverlap/README.md
GeneOverlap/build
GeneOverlap/build/vignette.rds
GeneOverlap/data
GeneOverlap/data/GeneOverlap.RData
GeneOverlap/inst
GeneOverlap/inst/doc
GeneOverlap/inst/doc/GeneOverlap.R
GeneOverlap/inst/doc/GeneOverlap.Rnw
GeneOverlap/inst/doc/GeneOverlap.pdf
GeneOverlap/inst/unitTests
GeneOverlap/inst/unitTests/test_AllGeneOverlapMethods.R
GeneOverlap/man
GeneOverlap/man/GeneOverlap-package.Rd GeneOverlap/man/GeneOverlap.Rd GeneOverlap/man/GeneOverlapMatrix.Rd GeneOverlap/man/drawHeatmap.Rd GeneOverlap/man/getGenomeSize.Rd GeneOverlap/man/getList.Rd GeneOverlap/man/getReadonly.Rd GeneOverlap/man/getReadonlyMatrix.Rd GeneOverlap/man/gs.RNASeq.Rd GeneOverlap/man/hESC.ChIPSeq.list.Rd GeneOverlap/man/hESC.RNASeq.list.Rd GeneOverlap/man/newGOM.Rd GeneOverlap/man/newGeneOverlap.Rd GeneOverlap/man/testGeneOverlap.Rd
GeneOverlap/tests
GeneOverlap/tests/runTests.R
GeneOverlap/vignettes
GeneOverlap/vignettes/GeneOverlap.Rnw
GeneOverlap/vignettes/GeneOverlap.bib
GeneOverlap/vignettes/Rplots.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.