GeneSelectMMD: Gene selection based on the marginal distributions of gene profiles that characterized by a mixture of three-component multivariate distributions
Version 2.20.1

Gene selection based on a mixture of marginal distributions

Browse man pages Browse package API and functions Browse package files

AuthorJarrett Morrow <remdj@channing.harvard.edu>, Weiliang Qiu <stwxq@channing.harvard.edu>, Wenqing He <whe@stats.uwo.ca>, Xiaogang Wang <stevenw@mathstat.yorku.ca>, Ross Lazarus <ross.lazarus@channing.harvard.edu>.
Bioconductor views DifferentialExpression
Date of publicationNone
MaintainerWeiliang Qiu <stwxq@channing.harvard.edu>
LicenseGPL (>= 2)
Version2.20.1
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GeneSelectMMD")

Man pages

errRates: Calculating FDR, FNDR, FPR, and FNR for a real microarray...
gsMMD: Gene selection based on a mixture of marginal distributions
gsMMD2: Gene selection based on a mixture of marginal distributions
gsMMD2.default: Gene selection based on a mixture of marginal distributions
gsMMD.default: Gene selection based on a mixture of marginal distributions
obtainResi: Replace expression levels by the residuals of regression...
plotHistDensity: Plot of histogram and density estimate of the pooled gene...

Functions

checkPara Source code
errRates Man page Source code
getIniMemGenes Source code
gsMMD Man page
gsMMD.default Man page
gsMMD2 Man page
gsMMD2.default Man page
kurtosisFunc Source code
obtainResi Man page Source code
optimalLambda Source code
paraRPConverter Source code
plotHistDensity Man page Source code
qqnormCorFunc Source code
skewnessFunc Source code
statVecFunc Source code
transBoxCox.default Source code
transBoxCox2 Source code
transBoxCoxMat Source code
transFunc Source code

Files

DESCRIPTION
INDEX
NAMESPACE
R
R/checkPara.R
R/errRates.R
R/getPara.R
R/getResiduals.R
R/gsMMD.R
R/gsMMD2.R
R/iniMemGenesTestFunc.R
R/myWilcox.R
R/paraEst.R
R/trans.R
R/visual.R
build
build/vignette.rds
inst
inst/doc
inst/doc/gsMMD.R
inst/doc/gsMMD.Rnw
inst/doc/gsMMD.pdf
man
man/errRates.Rd
man/gsMMD.Rd
man/gsMMD.default.Rd
man/gsMMD2.Rd
man/gsMMD2.default.Rd
man/obtainResi.Rd
man/plotHistDensity.Rd
src
src/Qfunc.f
src/blas.f
src/isnan.c
src/lbfgsb.f
src/lbfgsbDriver.f
src/linpack.f
src/llkhFun.f
src/myTtest.f
src/paraEstLoop.f
src/pt.c
src/timer.f
src/wiFun.f
vignettes
vignettes/GS207runTimesSim1k.pdf
vignettes/GeneSelectMMD.bib
vignettes/gsMMD.Rnw
GeneSelectMMD documentation built on May 20, 2017, 10:25 p.m.