API for Glimma
Interactive HTML graphics
| Global functions | |
|---|---|
| MA_details | Source code |
| MDS_details | Source code |
| XY_details | Source code |
| anno_from_count_rows | Source code |
| arraydata | Man page |
| arrayify | Source code |
| as.hexcol | Man page Source code |
| bsCol | Source code |
| bsRowEnd | Source code |
| bsRowStart | Source code |
| buildXYData | Man page Source code |
| char | Source code |
| checkCountsAndSamples | Source code |
| checkObjAnnoCountsShapes | Source code |
| checkSideMainPresent | Source code |
| checkThat | Source code |
| constructBarPlot | Source code |
| constructScatterPlot | Source code |
| convertStatusToCols | Source code |
| draw.plots | Source code |
| extractGroups | Man page Source code |
| firstChar | Source code |
| getCols | Source code |
| getLabels | Source code |
| getLogicalCols | Source code |
| getRows | Source code |
| get_coef_status | Source code |
| get_plots_and_links | Source code |
| get_plotting_data | Source code |
| get_plotting_data.DGELRT | Source code |
| get_plotting_data.MArrayLM | Source code |
| get_plotting_data.default | Source code |
| get_sample_exp | Source code |
| get_samples | Source code |
| glBar | Man page Source code |
| glBar.default | Man page Source code |
| glMDPlot | Man page Source code |
| glMDPlot.DESeqDataSet | Man page Source code |
| glMDPlot.DESeqResults | Man page Source code |
| glMDPlot.DGEExact | Man page |
| glMDPlot.DGELRT | Man page Source code |
| glMDPlot.MArrayLM | Man page Source code |
| glMDPlot.default | Man page Source code |
| glMDRmd | Man page Source code |
| glMDSPlot | Man page Source code |
| glMDSPlot.DESeqDataSet | Man page Source code |
| glMDSPlot.DGEList | Man page |
| glMDSPlot.default | Man page Source code |
| glScatter | Man page Source code |
| glScatter.default | Man page Source code |
| glTable | Man page Source code |
| glXYPlot | Man page Source code |
| glimma | Man page |
| glimmaMA | Man page Source code |
| glimmaMA.DESeqDataSet | Man page Source code |
| glimmaMA.DGEExact | Man page Source code |
| glimmaMA.DGELRT | Man page |
| glimmaMA.MArrayLM | Man page Source code |
| glimmaMDS | Man page Source code |
| glimmaMDS.DESeqDataSet | Man page Source code |
| glimmaMDS.DGEList | Man page Source code |
| glimmaMDS.default | Man page Source code |
| glimmaVolcano | Man page Source code |
| glimmaVolcano.DESeqDataSet | Man page Source code |
| glimmaVolcano.DGEExact | Man page Source code |
| glimmaVolcano.DGELRT | Man page |
| glimmaVolcano.MArrayLM | Man page Source code |
| glimmaXY | Man page Source code |
| glimmaXYWidget | Man page Source code |
| glimma_plot | Man page Source code |
| gllink | Man page Source code |
| gltablink | Man page Source code |
| hasCols | Source code |
| hasLength | Source code |
| hasRows | Source code |
| initialise_groups | Source code |
| is.hex | Man page Source code |
| isClass | Source code |
| isFactor | Source code |
| isIn | Source code |
| isLogical | Source code |
| isNumeric | Source code |
| isString | Source code |
| isType | Source code |
| isUnique | Source code |
| jsArgs | Source code |
| jsCall | Source code |
| jsChain | Source code |
| jsFunction | Source code |
| jsMethod | Source code |
| lastChar | Source code |
| lymphomaRNAseq | Man page |
| makeAnno | Source code |
| makeJson | Man page Source code |
| makeJson.NULL | Source code |
| makeJson.character | Source code |
| makeJson.data.frame | Man page Source code |
| makeJson.default | Source code |
| makeJson.factor | Source code |
| makeJson.jschart | Man page Source code |
| makeJson.list | Source code |
| makeJson.logical | Source code |
| makeJson.numeric | Source code |
| makeUnique | Source code |
| make_side_main_unique | Source code |
| naRowInds | Source code |
| not.null | Source code |
| notNull | Source code |
| pathMaker | Source code |
| plotWithTable | Source code |
| printJsonToFile | Source code |
| processArguments | Source code |
| processPlot | Source code |
| processTable | Source code |
| quotify | Source code |
| rmDuplicateCols | Source code |
| sameAs | Source code |
| sample_size | Source code |
| sanitisePath | Source code |
| seq_cols | Source code |
| seq_rows | Source code |
| setDisplayColumns | Source code |
| sortInsigPointsToTop | Source code |
| transformCounts | Source code |
| volcano_details | Source code |
| writeMaker | Source code |
