Files in Glimma
Interactive HTML graphics
.travis.yml
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
data/arraydata.rda
data/lymphomaRNAseq.rda
data/datalist
R/v1-glMDUtils.R
R/v1-utilities.R
R/v1-plotWithTable.R
R/helperFunctions.R
R/v1-hexcol.R
R/v1-glScatter.R
R/v1-textUtils.R
R/v1-gllink.R
R/v1-glBar.R
R/glimmaXY.R
R/v1-glTable.R
R/glimmaMDS.R
R/v1-glMDChecks.R
R/v1-checkThat.R
R/v1-glimma.R
R/v1-dataDoc.R
R/v1-jsonConvert.R
R/v1-package.R
R/v1-glMDPlot.R
R/v1-glXYPlot.R
R/v1-jsHelper.R
R/glimmaMA.R
R/v1-gltablink.R
R/glimmaVolcano.R
R/v1-glMDSPlot.R
vignettes/DESeq2.Rmd
vignettes/limma_edger.Rmd
man/glimmaMDS.Rd
man/glimmaVolcano.Rd
man/arraydata.Rd
man/glMDPlot.DESeqDataSet.Rd
man/glMDPlot.DESeqResults.Rd
man/glMDPlot.DGELRT.Rd
man/glMDPlot.Rd
man/glimmaMA.Rd
man/glimmaVolcano.DGELRT.Rd
man/extractGroups.Rd
man/is.hex.Rd
man/glXYPlot.Rd
man/glimma_plot.Rd
man/glimmaMA.DGELRT.Rd
man/glMDSPlot.Rd
man/glBar.default.Rd
man/glimmaVolcano.DESeqDataSet.Rd
man/glimmaMDS.default.Rd
man/glimmaMA.DGEExact.Rd
man/glScatter.Rd
man/glimmaXYWidget.Rd
man/glMDPlot.default.Rd
man/glMDSPlot.DGEList.Rd
man/gllink.Rd
man/glMDRmd.Rd
man/makeJson.jschart.Rd
man/glMDSPlot.DESeqDataSet.Rd
man/glimmaVolcano.MArrayLM.Rd
man/glMDPlot.DGEExact.Rd
man/glTable.Rd
man/glBar.Rd
man/glimmaMA.MArrayLM.Rd
man/glScatter.default.Rd
man/buildXYData.Rd
man/glMDPlot.MArrayLM.Rd
man/makeJson.data.frame.Rd
man/gltablink.Rd
man/glimmaXY.Rd
man/as.hexcol.Rd
man/glimma.Rd
man/glimmaVolcano.DGEExact.Rd
man/lymphomaRNAseq.Rd
man/glMDSPlot.default.Rd
man/glimmaMA.DESeqDataSet.Rd
man/glimmaMDS.DGEList.Rd
man/makeJson.Rd
man/glimmaMDS.DESeqDataSet.Rd
tests/testthat.R
tests/testthat/test-v1_data_voom.RData
tests/testthat/test-v1-hexcol.R
tests/testthat/test-v1_data_pasilla.RData
tests/testthat/test-glimmaXY.R
tests/testthat/test-v1-textUtils.R
tests/testthat/test-v1_data_MDS_DESeq.RData
tests/testthat/test-v1-jsonConvert.R
tests/testthat/test-v1_data_volcano_glXYPlot.RData
tests/testthat/test-v1-glMDUtils.R
tests/testthat/test-v1-glMDPlot.R
tests/testthat/test-v1-gllink.R
tests/testthat/test-glimmaMDS.R
tests/testthat/test-v1-glMDSPlot.R
tests/testthat/test-v1_data_little_mait_DGELRT.RData
tests/testthat/test-v1_data_DGEExact.RData
tests/testthat/test-v1-glXYPlot.R
tests/testthat/test-v1-utilities.R
tests/testthat/test-glimmaVolcano.R
tests/testthat/test-glimmaMA.R
tests/testthat/test-v1_data_DGELRT.RData
tests/testthat/test-v1_data_DESeqDataSet.RData
tests/testthat/test-v1_data_invalid_names_glMDPlot.RData
tests/testthat/test-v1_data_MDS_DGEList.RData
tests/testthat/test-helperFunctions.R
tests/testthat/test-v1-checkThat.r
tests/testthat/testdata/GSM1545541_JMS8-4.txt
tests/testthat/testdata/GSM1545538_purep53.txt
tests/testthat/testdata/GSM1545542_JMS8-5.txt
tests/testthat/testdata/GSM1545545_JMS9-P8c.txt
tests/testthat/testdata/GSM1545539_JMS8-2.txt
tests/testthat/testdata/GSM1545544_JMS9-P7c.txt
tests/testthat/testdata/GSM1545535_10_6_5_11.txt
tests/testthat/testdata/GSM1545536_9_6_5_11.txt
tests/testthat/testdata/GSM1545540_JMS8-3.txt
inst/NEWS
inst/CITATION
inst/doc/DESeq2.R
inst/doc/limma_edger.R
inst/doc/DESeq2.Rmd
inst/doc/limma_edger.Rmd
inst/doc/DESeq2.html
inst/doc/limma_edger.html
inst/htmlwidgets/glimmaMDS.js
inst/htmlwidgets/glimmaXY.js
inst/htmlwidgets/glimmaXY.yaml
inst/htmlwidgets/glimmaMDS.yaml
inst/htmlwidgets/lib/vega/vega_plots.css
inst/htmlwidgets/lib/vega/vega.js
inst/htmlwidgets/lib/vega/vega.min.js
inst/htmlwidgets/lib/vega-tooltip/vega-tooltip.css
inst/htmlwidgets/lib/vega-tooltip/vega-tooltip.js
inst/htmlwidgets/lib/GlimmaV2/XYSpecs.js
inst/htmlwidgets/lib/GlimmaV2/expressionSpec.js
inst/htmlwidgets/lib/GlimmaV2/saveTools.js
inst/htmlwidgets/lib/GlimmaV2/makeTooltip.js
inst/htmlwidgets/lib/GlimmaV2/MDSSpecs.js
inst/htmlwidgets/lib/datatables/datatables.min.js
inst/htmlwidgets/lib/datatables/datatables.min.css
inst/htmlwidgets/lib/datatables/datatables.js
inst/htmlwidgets/lib/datatables/datatables.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.print.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.bootstrap.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.bootstrap.min.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.jqueryui.min.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.bootstrap4.min.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.semanticui.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.print.min.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.semanticui.min.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.foundation.min.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.colVis.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.html5.min.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.html5.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.foundation.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/dataTables.buttons.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.flash.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.colVis.min.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/dataTables.buttons.min.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.jqueryui.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.flash.min.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/js/buttons.bootstrap4.js
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/swf/flashExport.swf
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.jqueryui.min.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.jqueryui.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.foundation.min.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/common.scss
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.semanticui.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.bootstrap4.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.bootstrap.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/mixins.scss
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.foundation.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.dataTables.min.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.bootstrap.min.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.bootstrap4.min.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.dataTables.css
inst/htmlwidgets/lib/datatables/Buttons-1.6.1/css/buttons.semanticui.min.css
inst/htmlwidgets/lib/datatables/JSZip-2.5.0/jszip.js
inst/htmlwidgets/lib/datatables/JSZip-2.5.0/jszip.min.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/images/sort_asc.png
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/images/sort_desc_disabled.png
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/images/sort_desc.png
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/images/sort_both.png
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/images/sort_asc_disabled.png
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/dataTables.bootstrap4.min.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/jquery.dataTables.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/dataTables.foundation.min.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/dataTables.jqueryui.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/dataTables.bootstrap.min.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/dataTables.bootstrap.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/dataTables.bootstrap4.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/dataTables.semanticui.min.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/jquery.dataTables.min.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/dataTables.jqueryui.min.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/dataTables.semanticui.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/js/dataTables.foundation.js
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/dataTables.jqueryui.css
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/jquery.dataTables.min.css
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/dataTables.bootstrap4.min.css
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/jquery.dataTables.css
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/dataTables.semanticui.css
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/dataTables.foundation.min.css
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/dataTables.foundation.css
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/dataTables.jqueryui.min.css
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/dataTables.bootstrap.css
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/dataTables.bootstrap.min.css
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/dataTables.bootstrap4.css
inst/htmlwidgets/lib/datatables/DataTables-1.10.20/css/dataTables.semanticui.min.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/dataTables.scroller.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/dataTables.scroller.min.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.semanicui.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.bootstrap.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.semanticui.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.jqueryui.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.semanticui.min.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.dataTables.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.foundation.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.foundation.min.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.bootstrap4.min.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.bootstrap.min.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.jqueryui.min.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/js/scroller.bootstrap4.js
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.foundation.min.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.bootstrap4.min.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.dataTables.min.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.semanticui.min.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.bootstrap.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.dataTables.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.bootstrap.min.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.foundation.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.jqueryui.min.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.bootstrap4.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.jqueryui.css
inst/htmlwidgets/lib/datatables/Scroller-2.0.1/css/scroller.semanticui.css
inst/htmlwidgets/lib/datatables/jQuery-1.12.4/jquery-1.12.4.min.js
inst/htmlwidgets/lib/datatables/jQuery-1.12.4/jquery-1.12.4.js
inst/htmlwidgets/lib/FileSaver/FileSaver.js
inst/v1/index.html
inst/v1/js/glimma.min.js
inst/v1/css/glimma.min.css
inst/v1/css/src/images/ui-icons_2e83ff_256x240.png
inst/v1/css/src/images/ui-bg_glass_75_e6e6e6_1x400.png
inst/v1/css/src/images/ui-bg_glass_55_fbf9ee_1x400.png
inst/v1/css/src/images/sort_asc.png
inst/v1/css/src/images/sort_desc_disabled.png
inst/v1/css/src/images/ui-icons_454545_256x240.png
inst/v1/css/src/images/ui-bg_glass_65_ffffff_1x400.png
inst/v1/css/src/images/ui-bg_highlight-soft_75_cccccc_1x100.png
inst/v1/css/src/images/favicon.ico
inst/v1/css/src/images/sort_desc.png
inst/v1/css/src/images/ui-icons_888888_256x240.png
inst/v1/css/src/images/animated-overlay.gif
inst/v1/css/src/images/sort_both.png
inst/v1/css/src/images/sort_asc_disabled.png
inst/v1/css/src/images/ui-bg_flat_0_aaaaaa_40x100.png
inst/v1/css/src/images/ui-bg_glass_75_dadada_1x400.png
inst/v1/css/src/images/ui-icons_222222_256x240.png
inst/v1/css/src/images/ui-bg_glass_95_fef1ec_1x400.png
inst/v1/css/src/images/ui-icons_cd0a0a_256x240.png
inst/v1/css/src/images/ui-bg_flat_75_ffffff_40x100.png
inst/RNAseq123/dge.rds
inst/RNAseq123/design.rds
inst/RNAseq123/contr.matrix.rds
