AlignedPairs | Get aligned node pairs |
AlignNetworks | Align networks |
AnalyzeAlignment | Analyze an alignment |
ComputeLinkParameters | Compute link parameters |
ComputeM | Compute score matrix M |
ComputeNodeParameters | Compute node parameters |
ComputeScores | Compute scores |
CreateScoreMatrix | Create score matrix |
EncodeDirectedGraph | Encode directed graph |
GenerateExample | Generate example input data |
GetBinNumber | Get bin number |
InitialAlignment | Create initial alignment |
InvertPermutation | Invert permutation |
LinearAssignment | Solve linear assignment problem |
MatrixToBin | Convert matrix to bin representation |
Permute | Permute rows and columns of a matrix |
Trace | Calculate trace of a matrix |
VectorToBin | Convert vector to bin representation |
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