Description Usage Arguments Details Value Author(s) Examples

View source: R/GraphAlignment.R

Encode an adjacency matrix for a directed graph into a symmetric matrix.

1 |

`matrix` |
square matrix |

`P` |
permutation vector |

This function encodes an adjacency matrix for a directed graph into a symmetric matrix. Currently only binary directed graphs are implemented. The adjacency matrix of a binary directed graph has elements 0, 1. The same graph can be represented by a symmetric adjacency matrix with elements -1, 0, 1, with the sign of the entry indicating the direction of the link. The result is obtained by setting entries (i, j) and (j, i) of the target matrix m' to 1 if entry m[i, j] = 1 and P[i] > P[j] and to -1 if m[i, j] = 1 and P[j] > P[i].

The return value is a symmetric matrix representing the encoded input matrix.

Joern P. Meier, Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg

1 2 | ```
dg <- matrix(c(0, 1, 0, 0, 1, 1, 1, 0, 1), 3, 3)
EncodeDirectedGraph(dg, 1:dim(dg)[1])
``` |

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