GraphAlignment: GraphAlignment

Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))

AuthorJoern P. Meier <mail@ionflux.org>, Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg.
Date of publicationNone
MaintainerJoern P. Meier <mail@ionflux.org>
Licensefile LICENSE
Version1.38.0
http://www.thp.uni-koeln.de/~berg/GraphAlignment/

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Files in this package

GraphAlignment/DESCRIPTION
GraphAlignment/LICENSE
GraphAlignment/NAMESPACE
GraphAlignment/R
GraphAlignment/R/GraphAlignment.R
GraphAlignment/build
GraphAlignment/build/vignette.rds
GraphAlignment/inst
GraphAlignment/inst/CITATION
GraphAlignment/inst/doc
GraphAlignment/inst/doc/GraphAlignment.R
GraphAlignment/inst/doc/GraphAlignment.Rnw
GraphAlignment/inst/doc/GraphAlignment.pdf
GraphAlignment/man
GraphAlignment/man/AlignNetworks.Rd GraphAlignment/man/AlignedPairs.Rd GraphAlignment/man/AnalyzeAlignment.Rd GraphAlignment/man/ComputeLinkParameters.Rd GraphAlignment/man/ComputeM.Rd GraphAlignment/man/ComputeNodeParameters.Rd GraphAlignment/man/ComputeScores.Rd GraphAlignment/man/CreateScoreMatrix.Rd GraphAlignment/man/EncodeDirectedGraph.Rd GraphAlignment/man/GenerateExample.Rd GraphAlignment/man/GetBinNumber.Rd GraphAlignment/man/InitialAlignment.Rd GraphAlignment/man/InvertPermutation.Rd GraphAlignment/man/LinearAssignment.Rd GraphAlignment/man/MatrixToBin.Rd GraphAlignment/man/Permute.Rd GraphAlignment/man/Trace.Rd GraphAlignment/man/VectorToBin.Rd
GraphAlignment/src
GraphAlignment/src/GA_alloc.c
GraphAlignment/src/GA_alloc.h
GraphAlignment/src/GA_matrix.c
GraphAlignment/src/GA_matrix.h
GraphAlignment/src/GA_matrix_R.c
GraphAlignment/src/GA_matrix_R.h
GraphAlignment/src/GA_message.c
GraphAlignment/src/GA_message.h
GraphAlignment/src/GA_vector.c
GraphAlignment/src/GA_vector.h
GraphAlignment/src/GA_vector_R.c
GraphAlignment/src/GA_vector_R.h
GraphAlignment/src/GraphAlignment.c
GraphAlignment/src/GraphAlignment.h
GraphAlignment/src/gnrl.h
GraphAlignment/src/lap.c
GraphAlignment/src/lap.h
GraphAlignment/vignettes
GraphAlignment/vignettes/GraphAlignment.Rnw
GraphAlignment/vignettes/a.pdf
GraphAlignment/vignettes/align_principle2b1.pdf
GraphAlignment/vignettes/align_principle2c1.pdf
GraphAlignment/vignettes/align_principle_short1.pdf
GraphAlignment/vignettes/binning-01a.pdf

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