API for HDF5Array
HDF5 backend for DelayedArray objects

Global functions
DelayedArray,HDF5ArraySeed-method Man page
DelayedArray,TENxMatrixSeed-method Man page
HDF5-dump-management Man page
HDF5Array Man page Source code
HDF5Array-class Man page
HDF5ArraySeed Man page Source code
HDF5ArraySeed-class Man page
HDF5Matrix Man page
HDF5Matrix-class Man page
HDF5RealizationSink Man page Source code
HDF5RealizationSink-class Man page
TENxMatrix Man page Source code
TENxMatrix-class Man page
TENxMatrixSeed Man page Source code
TENxMatrixSeed-class Man page
TENxRealizationSink Man page Source code
TENxRealizationSink-class Man page
appendDatasetCreationToHDF5DumpLog Man page Source code
append_data Source code
append_indptr Source code
append_row_indices Source code
as_HDF5Array Source code
as_TENxMatrix Source code
check_viewport Source code
chunkdim,HDF5ArraySeed-method Man page
chunkdim,HDF5RealizationSink-method Man page
chunkdim,TENxMatrixSeed-method Man page
class:HDF5Array Man page
class:HDF5ArraySeed Man page
class:HDF5Matrix Man page
class:HDF5RealizationSink Man page
class:TENxMatrix Man page
class:TENxMatrixSeed Man page
class:TENxRealizationSink Man page
close,TENxRealizationSink-method Man page
coerce,ANY,HDF5Array-method Man page
coerce,ANY,HDF5Matrix-method Man page
coerce,ANY,TENxMatrix-method Man page
coerce,DelayedArray,HDF5Array-method Man page
coerce,DelayedArray,TENxMatrix-method Man page
coerce,DelayedMatrix,HDF5Matrix-method Man page
coerce,DelayedMatrix,TENxMatrix-method Man page
coerce,HDF5Array,HDF5Matrix-method Man page
coerce,HDF5Matrix,HDF5Array-method Man page
coerce,HDF5RealizationSink,DelayedArray-method Man page
coerce,HDF5RealizationSink,HDF5Array-method Man page
coerce,HDF5RealizationSink,HDF5ArraySeed-method Man page
coerce,TENxRealizationSink,DelayedArray-method Man page
coerce,TENxRealizationSink,TENxMatrix-method Man page
coerce,TENxRealizationSink,TENxMatrixSeed-method Man page
create_and_log_HDF5_dataset Source code
create_dir Source code
create_empty_data Source code
create_empty_indptr Source code
create_empty_row_indices Source code
dim,HDF5ArraySeed-method Man page
dim,TENxMatrixSeed-method Man page
dim_as_integer Source code
dimnames,HDF5RealizationSink-method Man page
dimnames,TENxMatrixSeed-method Man page
dimnames,TENxRealizationSink-method Man page
dump-management Man page
extractNonzeroDataByCol Man page
extractNonzeroDataByCol,TENxMatrix-method Man page
extractNonzeroDataByCol,TENxMatrixSeed-method Man page
extract_array,HDF5ArraySeed-method Man page
extract_array,TENxMatrixSeed-method Man page
extract_array_from_HDF5ArraySeed Source code
extract_array_from_TENxMatrixSeed Source code
extract_data_from_adjacent_cols Source code
extract_nonzero_data_by_col Source code
extract_sparse_array,TENxMatrixSeed-method Man page
extract_sparse_array_from_TENxMatrixSeed Source code
fancy_mseq Source code
getHDF5DumpChunkDim Man page Source code
getHDF5DumpChunkLength Man page Source code
getHDF5DumpChunkShape Man page Source code
getHDF5DumpCompressionLevel Man page Source code
getHDF5DumpDir Man page Source code
getHDF5DumpFile Man page Source code
getHDF5DumpName Man page Source code
get_HDF5_dump_logfile Source code
get_TENx_component Source code
get_barcodes Source code
get_current_col_index Source code
get_data Source code
get_data_indices_by_col Source code
get_dataset_creation_global_counter Source code
get_dataset_creation_global_counter_filepath Source code
get_dump_autofile Source code
get_dump_autoname Source code
get_dump_files_global_counter Source code
get_dump_files_global_counter_filepath Source code
get_dump_names_global_counter Source code
get_dump_names_global_counter_filepath Source code
get_dump_specfile Source code
get_dump_specname Source code
get_gene_names Source code
get_genes Source code
get_global_counter Source code
get_h5dataset Source code
get_indptr Source code
get_row_indices Source code
get_shape Source code
h5append Source code
h5chunkdim Source code
h5createDataset2 Source code
h5dim Source code
h5exists Source code
h5length Source code
h5read2 Source code
has_trailing_slash Source code
init_HDF5_dataset_creation_global_counter Source code
init_HDF5_dump_files_global_counter Source code
init_HDF5_dump_names_global_counter Source code
init_global_counter Source code
is_sparse,TENxMatrixSeed-method Man page
linear_extract_nonzero_data_by_col Source code
linear_get_data Source code
linear_get_row_indices Source code
linear_load_SparseArraySeed_from_TENxMatrixSeed Source code
loadHDF5SummarizedExperiment Man page Source code
load_SparseArraySeed_from_TENxMatrixSeed Source code
lock_file Source code
locked_path Source code
lsHDF5DumpFile Man page Source code
matrixClass,HDF5Array-method Man page
normalize_compression_level Source code
normalize_dump_filepath Source code
normalize_dump_name Source code
normarg_chunkdim Source code
normarg_method Source code
normarg_path Source code
onLoad Source code
path,HDF5ArraySeed-method Man page
path,TENxMatrixSeed-method Man page
path<-,HDF5ArraySeed-method Man page
path<-,TENxMatrixSeed-method Man page
random_extract_nonzero_data_by_col Source code
random_load_SparseArraySeed_from_TENxMatrixSeed Source code
read_counter Source code
read_h5dataset_first_val Source code
read_sparse_block,TENxMatrix-method Man page
read_sparse_block,TENxMatrixSeed-method Man page
read_sparse_block_from_TENxMatrixSeed Source code
safe_file_rename Source code
saveHDF5SummarizedExperiment Man page Source code
setHDF5DumpChunkLength Man page Source code
setHDF5DumpChunkShape Man page Source code
setHDF5DumpCompressionLevel Man page Source code
setHDF5DumpDir Man page Source code
setHDF5DumpFile Man page Source code
setHDF5DumpName Man page Source code
set_dump_autofiles_mode Source code
set_dump_autonames_mode Source code
set_dump_dir Source code
set_dump_specfile Source code
set_dump_specname Source code
shorten_h5_paths Source code
show,TENxMatrixSeed-method Man page
showHDF5DumpLog Man page Source code
sparsity Man page
sparsity,TENxMatrix-method Man page
sparsity,TENxMatrixSeed-method Man page
stop_if_bad_dir Source code
test Source code
trim_trailing_slashes Source code
type,HDF5RealizationSink-method Man page
type,TENxRealizationSink-method Man page
unlock_file Source code
validate_HDF5Array Source code
validate_TENxMatrix Source code
writeHDF5Array Man page Source code
writeTENxMatrix Man page Source code
write_TENx_component Source code
write_barcodes Source code
write_block,HDF5RealizationSink-method Man page
write_block,TENxRealizationSink-method Man page
write_counter Source code
write_genes Source code
write_h5_assays Source code
write_shape Source code
write_sparse_block,TENxRealizationSink-method Man page
HDF5Array documentation built on Dec. 6, 2018, 6:01 p.m.