Man pages for HIPPO
Heterogeneity-Induced Pre-Processing tOol
| ensg_hgnc | A reference data frame that matches ENSG IDs to HGNC symbols |
| get_data_from_sce | Access data from SCE object |
| get_hippo | Access hippo object from SingleCellExperiment object. |
| get_hippo_diffexp | Return hippo_diffexp object |
| hippo | HIPPO's hierarchical clustering |
| hippo_diagnostic_plot | Conduct feature selection by computing test statistics for... |
| hippo_diffexp | HIPPO's differential expression |
| hippo_dimension_reduction | compute t-SNE or umap of each round of HIPPO |
| hippo_feature_heatmap | HIPPO's feature heatmap |
| hippo_pca_plot | visualize each round of hippo through t-SNE |
| hippo_tsne_plot | visualize each round of hippo through t-SNE |
| hippo_umap_plot | visualize each round of hippo through UMAP |
| nb_prob_zero | Expected zero proportion under Negative Binomial |
| pipe | re-export magrittr pipe operator |
| pois_prob_zero | Expected zero proportion under Poisson |
| preprocess_heterogeneous | Preprocess UMI data without cell label so that each row... |
| preprocess_homogeneous | Preprocess UMI data with inferred or known labels |
| toydata | A sample single cell sequencing data subsetted from Zheng2017 |
| zero_proportion_plot | visualize each round of hippo through zero proportion plot |
| zinb_prob_zero | Expected zero proportion under Negative Binomial |
