hippo_pca_plot: visualize each round of hippo through t-SNE

In HIPPO: Heterogeneity-Induced Pre-Processing tOol

Description

visualize each round of hippo through t-SNE

Usage

hippo_pca_plot(sce, k = NA, pointsize = 0.5, pointalpha = 0.5, plottitle = "")

Arguments

sce	SincleCellExperiment object with hippo and t-SNE result in it
k	number of rounds of clustering that you'd like to see result. Default is 1 to K
pointsize	size of the point for the plot (default 0.5)
pointalpha	transparency level of points for the plot (default 0.5)
plottitle	title for the ggplot

Value

ggplot for pca in each round

Examples

data(toydata)
set.seed(20200321)
toydata = hippo(toydata, K = 10,z_threshold = 1)
hippo_pca_plot(toydata, k = 2:3)

HIPPO documentation built on Nov. 8, 2020, 5:05 p.m.