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Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.
Package details |
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Author | Daniel Lai, Gavin Ha, Sohrab Shah |
Bioconductor views | CopyNumberVariation Microarray Preprocessing Sequencing Visualization |
Maintainer | Daniel Lai <dalai@bccrc.ca>, Sohrab Shah <shahs3@mskcc.org> |
License | GPL-3 |
Version | 1.32.0 |
Package repository | View on Bioconductor |
Installation |
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