addRD | add gene-level rowData derived from transcript level... |
ca43k | app to survey 43000 cancer transcriptomes |
get_ds4841 | return instance of ssrch::DocSet with metadata on 4841 human... |
htx_app | explore SRA metadata |
htx_load | load a SummarizedExperiment shell for the Human Transcriptome... |
htx_query_by_study_accession | retrieve 'restfulSE' SummarizedExperiment instance for... |
htx_query_by_text | subset compendium through keyword lookup |
HumanTranscriptomeCompendium.colnames | character vector of available samples in HDF cloud assay... |
load_bigrnaFiles | obtain listing of contents of BigRNA compendium (salmon runs) |
load_experTable | obtain listing of experiments and submission date/time in... |
load_studTable | obtain listing of all studies in compendium |
path_doc4842 | return path to metadata csvs in zip file |
procExpToGene | acquire a single sample from bigRNA compendium specified by... |
tx2gene_gencode27 | generate a data.frame mapping gencode 27 ensembl transcript... |
uniqueAcc_120518 | experiment accessions available in compendium as of may 12... |
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