Description Usage Arguments Value Note Examples
subset compendium through keyword lookup
1 | htx_query_by_text(query, ..., tryGrep = TRUE, ignore.case = TRUE)
|
query |
character(1) to be found in ls(ssrch::kw2docs(get_ds4841())) |
... |
passed to 'htx_query_by_study_accession' |
tryGrep |
logical(1) if TRUE, 'query' does not match any keyword directly, it will be treated as a regular expression and the vector of keywords will be grepped for pattern 'query'; defaults to TRUE |
ignore.case |
logical(1) used when tryGrep is TRUE, defaults to TRUE |
SummarizedExperiment instance
The DocSet instance returned by 'get_ds4841()' is used. Lookups are case-sensitive. Look carefully at note for 'htx_query_by_study_accession' to understand logic of incrementing metadata on a given input SummarizedExperiment.
1 | htx_query_by_text("HNRNPC")
|
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