htx_app: explore SRA metadata
In HumanTranscriptomeCompendium: Tools to work with a Compendium of 181000 human transcriptome sequencing studies
Description
Usage
Value
Note
Examples
Description
explore SRA metadata
Usage
1
htx_app()
Value
a SummarizedExperiment can be requested through an event
Note
This function deals with
extraction of compendium elements. The overall scope is
determined by HumanTranscriptomeCompendium::studTable which is the list of
all studies with taxon 9606, strategy RNA-seq,
source transcriptomic. Some studies will not have
experiments in the compendium, and if such are selected,
a warning will be generated in the session.
Examples
1
if (interactive()) htx_app()
HumanTranscriptomeCompendium documentation built on Nov. 8, 2020, 8:15 p.m.
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Description Usage Value Note Examples
Description
explore SRA metadata
Usage
1 | htx_app()
|
Value
a SummarizedExperiment can be requested through an event
Note
This function deals with extraction of compendium elements. The overall scope is determined by HumanTranscriptomeCompendium::studTable which is the list of all studies with taxon 9606, strategy RNA-seq, source transcriptomic. Some studies will not have experiments in the compendium, and if such are selected, a warning will be generated in the session.
Examples
1 | if (interactive()) htx_app()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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