ExonsCluster: Construct representative Exons

Description Usage Arguments Value Author(s) Examples

View source: R/ExonsCluster.R

Description

This function constructs representative Exons.

Usage

1
    ExonsCluster(ASdb,GTFdb,Ncor=1,txTable=NULL)

Arguments

ASdb

An ASdb object containing "SplicingModel" from the Splicingfinder funtion.

GTFdb

A TxDb object in the GenomicFeatures package.

Ncor

The number of cores for multi-threads function.

txTable

The matrix of transcripts including transcript IDs, Ensembl gene names, Ensembl transcript names, transcript start sites, and transcript end sites.

Value

ASdb containing representative exons.

Author(s)

Seonggyun Han, Younghee Lee

Examples

1
2
3
4
5
6
7
    sampleDB <- system.file("extdata", "sampleDB", package="IMAS")
    transdb <- loadDb(sampleDB)
    ## Not run: 
    ASdb <- Splicingfinder(transdb,Ncor=1)
    ASdb <- ExonsCluster(ASdb,transdb)
    
## End(Not run)

IMAS documentation built on Nov. 8, 2020, 7:48 p.m.