ExonsCluster: Construct representative Exons

In IMAS: Integrative analysis of Multi-omics data for Alternative Splicing

Description

This function constructs representative Exons.

Usage

    ExonsCluster(ASdb,GTFdb,Ncor=1,txTable=NULL)

Arguments

ASdb	An ASdb object containing "SplicingModel" from the Splicingfinder funtion.
GTFdb	A TxDb object in the GenomicFeatures package.
Ncor	The number of cores for multi-threads function.
txTable	The matrix of transcripts including transcript IDs, Ensembl gene names, Ensembl transcript names, transcript start sites, and transcript end sites.

Value

ASdb containing representative exons.

Author(s)

Seonggyun Han, Younghee Lee

Examples

    sampleDB <- system.file("extdata", "sampleDB", package="IMAS")
    transdb <- loadDb(sampleDB)
    ## Not run: 
    ASdb <- Splicingfinder(transdb,Ncor=1)
    ASdb <- ExonsCluster(ASdb,transdb)
    
## End(Not run)

IMAS documentation built on Nov. 8, 2020, 7:48 p.m.