Description Usage Arguments Value Author(s) Examples
This function constructs representative Exons.
1 | ExonsCluster(ASdb,GTFdb,Ncor=1,txTable=NULL)
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ASdb |
An ASdb object containing "SplicingModel" from the |
GTFdb |
A TxDb object in the GenomicFeatures package. |
Ncor |
The number of cores for multi-threads function. |
txTable |
The matrix of transcripts including transcript IDs, Ensembl gene names, Ensembl transcript names, transcript start sites, and transcript end sites. |
ASdb containing representative exons.
Seonggyun Han, Younghee Lee
1 2 3 4 5 6 7 | sampleDB <- system.file("extdata", "sampleDB", package="IMAS")
transdb <- loadDb(sampleDB)
## Not run:
ASdb <- Splicingfinder(transdb,Ncor=1)
ASdb <- ExonsCluster(ASdb,transdb)
## End(Not run)
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