R/classes.R

In IPPD: Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching

setClass(Class="peaklist",
         representation(peaklist = "matrix",
                        peaklistprocessed = "matrix",
                        model = "character",
                        averagine.table = "matrix",
                        loss = "character",
                        alpha = "function",
                        sigma = "function",
                        mu = "function",
                        charges = "numeric",
                        basis = "sparseMatrix",
                        book = "matrix",
                        beta = "numeric",
                        locnoise = "matrix",
                        noiselevel = "numeric",
                        goodnessoffit = "numeric",
                        data = "list"))
                   
setClass(Class="modelfit",
         representation(model = "character",
                        fitting = "character",
                        alphafunction = "function",
                        sigmafunction = "function",
                        mufunction = "function",
                        peakfitresults = "matrix",
                        bestpeak = "list"))