IdMappingRetrieval: ID Mapping Data Retrieval

Data retrieval for identifier mapping performance analysis

AuthorAlex Lisovich, Roger Day
Date of publicationNone
MaintainerAlex Lisovich <alex.lisovich@gmail.com>, Roger Day <day01@pitt.edu>
LicenseGPL-2
Version1.22.0

View on Bioconductor

Man pages

addServices.ServiceManager: Add services to the ServiceManager object

Annotation: The Annotation class

AnnotationAffx: The AnnotationAffx class

AnnotationEnsembl: The AnnotationEnsembl class

AnnotationEnsemblCsv: The AnnotationEnsemblCsv class

AnnotationEnvision: The AnnotationEnvision class

AnnotationNetAffx: The AnnotationNetAffx class

as.IdMap: Perform the transformation of the UniquePairs object into the...

as.UniquePairs: Create a UniquePairs object by converting a single IdMap or a...

filesExist.AnnotationNetAffx: Check if the AnnotationNetAffx contains the reference to an...

Generic.Roo: Generic R.00 object methods

getColumns.Annotation: Extract ID match pairs from the data frame obtained from the...

getColumns.AnnotationAffx: Extract ID match pairs from the data frame obtained from the...

getColumns.AnnotationEnsembl: Extract ID match pairs from the data frame obtained from the...

getColumns.AnnotationEnsemblCsv: Extract ID match pairs from the data frame obtained from the...

getColumns.AnnotationEnvision: Extract ID match pairs from the data frame obtained from the...

getDataFrame.Annotation: Get the entire data set available from a particular service...

getDataFrameList.ServiceManager: Collect raw data data from various online query systems...

getFolderName.Annotation: Get caching folder name for a given Annotation object

getIdMap.Annotation: Get an IdMap object using the data retrieved by a particular...

getIdMapList.ServiceManager: Collect ID mapping data from various online query systems...

getServiceRoot.Annotation: Get a root directory for a particular annotation object

getServices.ServiceManager: Get list of annotation services encapsulated within the...

IdMappingAnnotationData.root: Annotation data root directory

IdMappingRetrieval-package: Id Mapping Retrieval.

readDF.Annotation: Retrieve the annotation data frame from the service data...

readDF.AnnotationAffx: Retrieve the annotation data frame from the service data...

readDF.AnnotationEnsembl: Retrieve the annotation data frame from the Ensembl online...

readDF.AnnotationEnsemblCsv: Retrieve the annotation data frame from the Ensembl csv query...

readDF.AnnotationEnvision: Retrieve the annotation data frame using Envision online...

readDF.AnnotationNetAffx: Retrieve the annotation data frame from the service data...

ServiceManager: The ServiceManager class

setOptions.Annotation: Set the parameters for an annotation object

setServices.ServiceManager: Set the list of services for a ServiceManager object

subsetByColumn: Extract subset of rows from a data frame or a list of data...

swapKeys: Swap the primary and secondary key columns

Files in this package

IdMappingRetrieval/.BBSoptions
IdMappingRetrieval/DESCRIPTION
IdMappingRetrieval/IdMappingRetrieval.Rproj
IdMappingRetrieval/NAMESPACE
IdMappingRetrieval/R
IdMappingRetrieval/R/IdMappingRetrieval-package.R IdMappingRetrieval/R/annotation.R IdMappingRetrieval/R/annotationAffx.R IdMappingRetrieval/R/annotationDataRoot.R IdMappingRetrieval/R/annotationEnsembl.R IdMappingRetrieval/R/annotationEnsemblCsv.R IdMappingRetrieval/R/annotationEnvision.R IdMappingRetrieval/R/annotationNetAffx.R IdMappingRetrieval/R/compatibility.R IdMappingRetrieval/R/serviceManager.R IdMappingRetrieval/R/zzz.R
IdMappingRetrieval/README.md
IdMappingRetrieval/build
IdMappingRetrieval/build/vignette.rds
IdMappingRetrieval/demo
IdMappingRetrieval/demo/00Index
IdMappingRetrieval/demo/DataCollection.R
IdMappingRetrieval/inst
IdMappingRetrieval/inst/doc
IdMappingRetrieval/inst/doc/IdMappingRetrieval.R
IdMappingRetrieval/inst/doc/IdMappingRetrieval.Rnw
IdMappingRetrieval/inst/doc/IdMappingRetrieval.pdf
IdMappingRetrieval/man
IdMappingRetrieval/man/Annotation.Rd IdMappingRetrieval/man/AnnotationAffx.Rd IdMappingRetrieval/man/AnnotationEnsembl.Rd IdMappingRetrieval/man/AnnotationEnsemblCsv.Rd IdMappingRetrieval/man/AnnotationEnvision.Rd IdMappingRetrieval/man/AnnotationNetAffx.Rd IdMappingRetrieval/man/Generic.Roo.Rd IdMappingRetrieval/man/IdMappingAnnotationData.root.Rd IdMappingRetrieval/man/IdMappingRetrieval-package.Rd IdMappingRetrieval/man/ServiceManager.Rd IdMappingRetrieval/man/addServices.ServiceManager.Rd IdMappingRetrieval/man/as.IdMap.Rd IdMappingRetrieval/man/as.UniquePairs.Rd IdMappingRetrieval/man/filesExist.AnnotationNetAffx.Rd IdMappingRetrieval/man/getColumns.Annotation.Rd IdMappingRetrieval/man/getColumns.AnnotationAffx.Rd IdMappingRetrieval/man/getColumns.AnnotationEnsembl.Rd IdMappingRetrieval/man/getColumns.AnnotationEnsemblCsv.Rd IdMappingRetrieval/man/getColumns.AnnotationEnvision.Rd IdMappingRetrieval/man/getDataFrame.Annotation.Rd IdMappingRetrieval/man/getDataFrameList.ServiceManager.Rd IdMappingRetrieval/man/getFolderName.Annotation.Rd IdMappingRetrieval/man/getIdMap.Annotation.Rd IdMappingRetrieval/man/getIdMapList.ServiceManager.Rd IdMappingRetrieval/man/getServiceRoot.Annotation.Rd IdMappingRetrieval/man/getServices.ServiceManager.Rd IdMappingRetrieval/man/readDF.Annotation.Rd IdMappingRetrieval/man/readDF.AnnotationAffx.Rd IdMappingRetrieval/man/readDF.AnnotationEnsembl.Rd IdMappingRetrieval/man/readDF.AnnotationEnsemblCsv.Rd IdMappingRetrieval/man/readDF.AnnotationEnvision.Rd IdMappingRetrieval/man/readDF.AnnotationNetAffx.Rd IdMappingRetrieval/man/setOptions.Annotation.Rd IdMappingRetrieval/man/setServices.ServiceManager.Rd IdMappingRetrieval/man/subsetByColumn.Rd IdMappingRetrieval/man/swapKeys.Rd
IdMappingRetrieval/vignettes
IdMappingRetrieval/vignettes/IdMappingRetrieval.Rnw

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