JunctionSeq: JunctionSeq: A Utility for Detection of Differential Exon and Splice-Junction Usage in RNA-Seq data

A Utility for Detection and Visualization of Differential Exon or Splice-Junction Usage in RNA-Seq data.

AuthorStephen Hartley [aut, cre] (PhD), Simon Anders [cph], Alejandro Reyes [cph]
Date of publicationNone
MaintainerStephen Hartley <JunctionSeq-contact@list.nih.gov>
Licensefile LICENSE
Version1.4.0
http://hartleys.github.io/JunctionSeq/index.html

View on Bioconductor

Files in this package

JunctionSeq/DESCRIPTION
JunctionSeq/LICENSE
JunctionSeq/NAMESPACE
JunctionSeq/NEWS
JunctionSeq/R
JunctionSeq/R/00.minor.utils.R JunctionSeq/R/03.AllClasses.R JunctionSeq/R/DESeq2.adapted.cpp.wrappers.R JunctionSeq/R/adapted.functions.R JunctionSeq/R/file.output.R JunctionSeq/R/func.R JunctionSeq/R/internal.func.R JunctionSeq/R/main.analysis.R JunctionSeq/R/main.plotAlt.R JunctionSeq/R/main.plotGenes.R JunctionSeq/R/plotting.helpers.R
JunctionSeq/build
JunctionSeq/build/vignette.rds
JunctionSeq/inst
JunctionSeq/inst/CITATION
JunctionSeq/inst/doc
JunctionSeq/inst/doc/JunctionSeq.Rnw
JunctionSeq/inst/doc/JunctionSeq.pdf
JunctionSeq/inst/doc/gpl.v3.txt
JunctionSeq/inst/extdata
JunctionSeq/inst/extdata/styles.css
JunctionSeq/man
JunctionSeq/man/JunctionSeqCountSet-class.Rd JunctionSeq/man/buildAllPlots.Rd JunctionSeq/man/buildAllPlotsForGene.Rd JunctionSeq/man/defaultColorList.Rd JunctionSeq/man/estimateEffectSizes.Rd JunctionSeq/man/estimateJunctionSeqDispersions.Rd JunctionSeq/man/estimateJunctionSeqSizeFactors.Rd JunctionSeq/man/fitJunctionSeqDispersionFunction.Rd JunctionSeq/man/plotDispEsts.Rd JunctionSeq/man/plotJunctionSeqResultsForGene.Rd JunctionSeq/man/plotMA.Rd JunctionSeq/man/readAnnotationData.Rd JunctionSeq/man/readJunctionSeqCounts.Rd JunctionSeq/man/runJunctionSeqAnalyses.Rd JunctionSeq/man/testForDiffUsage.Rd JunctionSeq/man/writeBedTrack.Rd JunctionSeq/man/writeCompleteResults.Rd
JunctionSeq/vignettes
JunctionSeq/vignettes/JunctionSeq.Rnw
JunctionSeq/vignettes/JunctionSeq.bib
JunctionSeq/vignettes/figs
JunctionSeq/vignettes/figs/DAY-wiggle.png
JunctionSeq/vignettes/figs/SHAM1_RG1-wiggle.png
JunctionSeq/vignettes/figs/final.png
JunctionSeq/vignettes/figs/fullMultiWig.png
JunctionSeq/vignettes/figs/junctions.png

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