M3D: Identifies differentially methylated regions across testing groups

This package identifies statistically significantly differentially methylated regions of CpGs. It uses kernel methods (the Maximum Mean Discrepancy) to measure differences in methylation profiles, and relates these to inter-replicate changes, whilst accounting for variation in coverage profiles.

Package details

AuthorTom Mayo
Bioconductor views Coverage CpGIsland DNAMethylation DifferentialMethylation
MaintainerTom Mayo <t.mayo@ed.ac.uk>
LicenseArtistic License 2.0
Version1.22.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("M3D")

Try the M3D package in your browser

Any scripts or data that you put into this service are public.

M3D documentation built on April 29, 2020, 5:59 a.m.