M3D: Identifies differentially methylated regions across testing groups

This package identifies statistically significantly differentially methylated regions of CpGs. It uses kernel methods (the Maximum Mean Discrepancy) to measure differences in methylation profiles, and relates these to inter-replicate changes, whilst accounting for variation in coverage profiles.

Package details

AuthorTom Mayo
Bioconductor views Coverage CpGIsland DNAMethylation DifferentialMethylation
MaintainerTom Mayo <[email protected]>
LicenseArtistic License 2.0
Package repositoryView on Bioconductor
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M3D documentation built on Nov. 1, 2018, 4:23 a.m.