Files in M3D
Identifies differentially methylated regions across testing groups
.BBSoptions
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
src/cpp_fns.cpp
src/RcppExports.cpp
data/MMDlistDemo.rda
data/datalist
data/rrbsDemo.rda
data/CpGsDemo.rda
data/PDemo.rda
R/M3D_Single.R
R/readBedFiles.R
R/findComps.R
R/M3D_Wrapper.R
R/M3D.R
R/RcppExports.R
R/pvals.R
R/plotMethProfile.R
R/pvals_lite.R
R/plotCoverageSampleProfiles.R
R/zzz.R
R/plotMethSampleProfiles.R
R/medianFreq.R
R/M3D_Wrapper_lite.R
R/readBedRaw.R
R/test_colData_structure.R
R/determineGroupComps.R
vignettes/M3D_vignette.Rnw
vignettes/M3D_vignette-M3DstatPlot.pdf
vignettes/M3D_vignette-M3DhistPlot.pdf
vignettes/M3D_vignette.bib
man/MMDlistDemo.Rd
man/test_colData_structure.Rd
man/CpGsDemo.Rd
man/plotMethSampleProfiles.Rd
man/plotMethProfile.Rd
man/rrbsDemo.Rd
man/findComps.Rd
man/median_freq.Rd
man/PDemo.Rd
man/M3D-package.Rd
man/M3D_Wrapper_lite.Rd
man/medianFreq.Rd
man/M3D_Single.Rd
man/readBedFiles.Rd
man/determineGroupComps.Rd
man/M3D_Wrapper.Rd
man/pvals_lite.Rd
man/plotCoverageSampleProfiles.Rd
man/pvals.Rd
man/readBedRaw.Rd
tests/testthat.R
tests/testthat/test_lite_fns.R
tests/testthat/test_hidden_fns.R
tests/testthat/test_non_lite_fns.R
inst/doc/M3D_vignette.Rnw
inst/doc/M3D_vignette.pdf
inst/doc/M3D_vignette.R
