on_plate_selection: Sort experimental design on graphical 96-well-plate

Description Usage Arguments Value Examples

View source: R/on_plate_selection.r

Description

Loads user's data, prompt a graphical representation of a 96 well plate and let the user select where the duplicates of each condition were placed. Use for reordering excel file. Plate image with selection can also be saved in the form of a png file in the "specified_path/output_MQ" directory.

Usage

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on_plate_selection(MACSQuant,number_of_replicates,number_of_conditions,
control=FALSE,save.files=FALSE)

Arguments

MACSQuant

object of class MACSQuant resulting of the function load_maxQuant(). Contains the original data table

number_of_replicates

For each condition, the number of duplicates (must be the same for all conditions)

number_of_conditions

The number of conditions tested (eg: Drug 1 alone, Drug 2 alone)

control

Is there a control in this experiment (eg: Staurosporin)

save.files

Used to save the image in the output folder

Value

A formatted report file along with intermediates results

Examples

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print("run manually, requires user input")
# on_plate_selection(MACSQuant,3,5)
# let you select 5 conditions of 3 replicates each

MACSQuantifyR documentation built on Nov. 8, 2020, 5:08 p.m.