printMBCBOutput: MBCB - Model-Based Background Correction for Illumina...

In MBCB: MBCB (Model-based Background Correction for Beadarray)

Description

This function is used to neatly output the values created by the other methods in the MBCB package.

Usage

  printMBCBOutput(sig, 
    average, 
    rmaBool, 
    npBool, 
    mleBool, 
    bayesBool, 
    gmleBool, 
    avgOutputFile, 
    detailOutputFile)

Arguments

sig	A list corresponding to the backgrdoun-corrected signal values (as is generated by the mbcb.correct function). The list should have elements for all desired background correction methods named 'NP', 'RMA', 'Bayes', and/or 'MLE'.
average	A list containing the average values (as is generated by the mbcb.correct function). The list should have elements for all desired background correction methods named 'NP', 'RMA', 'Bayes', and/or 'MLE'.
npBool	A boolean value representing the desire to compute the non-parametric background correction values.
rmaBool	A boolean value representing the desire to compute the RMA background correction values.
mleBool	A boolean value representing the desire to compute the MLE background correction values.
bayesBool	A boolean value representing the desire to compute the Bayes background correction values.
gmleBool	A boolean value representing the desire to compute the GMLE background correction values.
avgOutputFile	The base file name to which suffixes and a file extension will be appended (i.e. 'C:/output'). These files will store the average values of each background correction method selected.
detailOutputFile	The base file name to which suffixes and a file extension will be appended (i.e. 'C:/output'). These files will store the background corrected intensities

Value

This function prints corresponding CSV files based on which background-correction methods were selected.

Author(s)

Yang Xie [e-mail], Min Chen [e-mail], Jeff Allen [e-mail]

See Also

mbcb.main

MBCB documentation built on Nov. 8, 2020, 5:49 p.m.