MEDME: Modelling Experimental Data from MeDIP Enrichment

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Description: MEDME allows the prediction of absolute and relative methylation levels based on measures obtained by MeDIP-microarray experiments

Author
Mattia Pelizzola and Annette Molinaro
Date of publication
None
Maintainer
Mattia Pelizzola <mattia.pelizzola@gmail.com>
License
GPL (>= 2)
Version
1.34.0

View on Bioconductor

Man pages

CGcount
Determining the count of CpG dinucleotides for a set of...
MEDME
Determining the logistic model of MeDIP enrichment in respect...
MEDME.predict
Applying the logistic model on MeDIP enrichment data
MEDME.readFiles
reading sgr or gff files for MEDME
MEDMEset-class
Class "MEDMEset"
MEDME.writeFiles
writeFiles sgr or gff files from MEDME output
smooth
Determining weighted MeDIP data
testMEDMEset
Dataset of class MEDMEset for testing MEDME

Files in this package

MEDME/DESCRIPTION
MEDME/NAMESPACE
MEDME/R
MEDME/R/CGcount.R
MEDME/R/MEDME.R
MEDME/R/MEDME.predict.R
MEDME/R/MEDME.readFiles.R
MEDME/R/MEDME.writeFiles.R
MEDME/R/MEDMEset-class.R
MEDME/R/smooth.R
MEDME/R/zzz.R
MEDME/build
MEDME/build/vignette.rds
MEDME/data
MEDME/data/testMEDMEset.rda
MEDME/inst
MEDME/inst/CITATION
MEDME/inst/doc
MEDME/inst/doc/MEDME.R
MEDME/inst/doc/MEDME.pdf
MEDME/inst/doc/MEDME.rnw
MEDME/man
MEDME/man/CGcount.Rd
MEDME/man/MEDME.Rd
MEDME/man/MEDME.predict.Rd
MEDME/man/MEDME.readFiles.Rd
MEDME/man/MEDME.writeFiles.Rd
MEDME/man/MEDMEset-class.Rd
MEDME/man/smooth.Rd
MEDME/man/testMEDMEset.Rd
MEDME/src
MEDME/src/MEDMEweight.c
MEDME/vignettes
MEDME/vignettes/MEDME.rnw