MEDME: Modelling Experimental Data from MeDIP Enrichment
Version 1.36.0

Description: MEDME allows the prediction of absolute and relative methylation levels based on measures obtained by MeDIP-microarray experiments

Browse man pages Browse package API and functions Browse package files

AuthorMattia Pelizzola and Annette Molinaro
Bioconductor views CpGIsland DNAMethylation Microarray
Date of publicationNone
MaintainerMattia Pelizzola <mattia.pelizzola@gmail.com>
LicenseGPL (>= 2)
Version1.36.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MEDME")

Man pages

CGcount: Determining the count of CpG dinucleotides for a set of...
MEDME: Determining the logistic model of MeDIP enrichment in respect...
MEDME.predict: Applying the logistic model on MeDIP enrichment data
MEDME.readFiles: reading sgr or gff files for MEDME
MEDMEset-class: Class "MEDMEset"
MEDME.writeFiles: writeFiles sgr or gff files from MEDME output
smooth: Determining weighted MeDIP data
testMEDMEset: Dataset of class MEDMEset for testing MEDME

Functions

AMS Man page
AMS,MEDMEset-method Man page
CG Man page
CG,MEDMEset-method Man page
CGcount Man page Source code
CGcounts Man page
MEDME Man page
MEDME.predict Man page
MEDME.readFiles Man page
MEDME.writeFiles Man page
MEDMEset-class Man page
RMS Man page
RMS,MEDMEset-method Man page
[,MEDMEset-method Man page
chr Man page
chr,MEDMEset-method Man page
initialize,MEDMEset-method Man page
logR Man page
logR,MEDMEset-method Man page
onLoad Source code
org Man page
org,MEDMEset-method Man page
organism Man page
pos Man page
pos,MEDMEset-method Man page
show,MEDMEset-method Man page
smooth Man page
smoothed Man page
smoothed,MEDMEset-method Man page
testMEDMEset Man page

Files

DESCRIPTION
NAMESPACE
R
R/CGcount.R
R/MEDME.R
R/MEDME.predict.R
R/MEDME.readFiles.R
R/MEDME.writeFiles.R
R/MEDMEset-class.R
R/smooth.R
R/zzz.R
build
build/vignette.rds
data
data/testMEDMEset.rda
inst
inst/CITATION
inst/doc
inst/doc/MEDME.R
inst/doc/MEDME.pdf
inst/doc/MEDME.rnw
man
man/CGcount.Rd
man/MEDME.Rd
man/MEDME.predict.Rd
man/MEDME.readFiles.Rd
man/MEDME.writeFiles.Rd
man/MEDMEset-class.Rd
man/smooth.Rd
man/testMEDMEset.Rd
src
src/MEDMEweight.c
vignettes
vignettes/MEDME.rnw
MEDME documentation built on May 20, 2017, 10:06 p.m.