R/data-bcMigsaRes.R

In MIGSA: Massive and Integrative Gene Set Analysis

#' A MIGSA results object obtained from breast cancer data
#'
#' A MIGSA results object (MIGSAres) obtained using the datasets:
#' \itemize{
#' \item mainz (microarray).
#' \item nki (microarray).
#' \item tcga (microarray).
#' \item tcga (RNAseq).
#' \item transbig (microarray).
#' \item unt (microarray).
#' \item upp (microarray).
#' \item vdx (microarray).
#' }
#' Each dataset subjects were classified using the PAM50 algorithm. For this
#' analysis only Basal and Luminal A subjects were kept (this was the contrast
#' used, i.e., Basal vs. LumA).
#'
#' Datasets were tested for gene set enrichment over:
#' \itemize{
#' \item the org.Hs.eg.db Gene Ontology gene sets, resulting in 14,291 as BP,
#' 1,692 CC and 4,263 MF.
#' \item KEGG gene sets downloaded from enrichr database resulting in 179 gene
#' sets.
#' }
#'
#' NOTE: For package space purposes, this bcMigsaRes object contains only the
#' first 200 gene sets (subsetted from total result).
#' For fully described information and a step-by-step guide in how this object
#' was generated, please refer to MIGSA's Vignette.
#' Full bcMigsaRes object results can be downloaded (refer to Vignette).
#'
#' @docType data
#' @format A MIGSAres object.
#' @name bcMigsaRes
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