MLInterfaces: Uniform interfaces to R machine learning procedures for data in Bioconductor containers

This package provides uniform interfaces to machine learning code for data in R and Bioconductor containers.

Author
Vince Carey <stvjc@channing.harvard.edu>, Robert Gentleman, Jess Mar, and contributions from Jason Vertrees <jv@cs.dartmouth.edu> and Laurent Gatto <lg390@cam.ac.uk>
Date of publication
None
Maintainer
V. Carey <stvjc@channing.harvard.edu>
License
LGPL
Version
1.54.0

View on Bioconductor

Man pages

balKfold.xvspec
generate a partition function for cross-validation, where the...
classifierOutput-class
Class "classifierOutput"
clusteringOutput-class
container for clustering outputs in uniform structure
confuMat-methods
Compute the confusion matrix for a classifier.
confuTab
Compute confusion tables for a confusion matrix.
fs.absT
support for feature selection in cross-validation
fsHistory
extract history of feature selection for a cross-validated...
hclustWidget
shiny-oriented GUI for cluster or classifier exploration
learnerSchema-class
Class "learnerSchema" - convey information on a machine...
MLearn-new
revised MLearn interface for machine learning
MLIntInternals
MLInterfaces infrastructure
performance-analytics
Assessing classifier performance
planarPlot-methods
Methods for Function planarPlot in Package 'MLInterfaces'
plspinHcube
shiny app for interactive 3D visualization of mlbench...
predict.classifierOutput
Predict method for 'classifierOutput' objects
projectedLearner-class
Class '"projectedLearner"'
projectLearnerToGrid
create learned tesselation of feature space after PC...
RAB
real adaboost (Friedman et al)
raboostCont-class
Class "raboostCont" ~~~
varImpStruct-class
Class "varImpStruct" - collect data on variable importance...
xvalLoop
Cross-validation in clustered computing environments
xvalSpec
container for information specifying a cross-validated...

Files in this package

MLInterfaces/DESCRIPTION
MLInterfaces/NAMESPACE
MLInterfaces/NEWS
MLInterfaces/R
MLInterfaces/R/AllClasses.R
MLInterfaces/R/MLIConverters.R
MLInterfaces/R/MLIPredicters.R
MLInterfaces/R/MLearn.R
MLInterfaces/R/RAB.R
MLInterfaces/R/clDesign.R
MLInterfaces/R/featSel.R
MLInterfaces/R/hcw.R
MLInterfaces/R/localBridge.R
MLInterfaces/R/methods-classifierOutput.R
MLInterfaces/R/methods-clusteringOutput.R
MLInterfaces/R/methods-learnerSchema.R
MLInterfaces/R/mlw.R
MLInterfaces/R/partPlot.R
MLInterfaces/R/performance-analytics.R
MLInterfaces/R/plsdaI.R
MLInterfaces/R/plspinHcube.R
MLInterfaces/R/pplot.R
MLInterfaces/R/pv.R
MLInterfaces/R/schemaInterfaces.R
MLInterfaces/R/varImp.R
MLInterfaces/R/xval.R
MLInterfaces/README.txt
MLInterfaces/build
MLInterfaces/build/vignette.rds
MLInterfaces/inst
MLInterfaces/inst/MLIschema
MLInterfaces/inst/MLIschema/notes.txt
MLInterfaces/inst/doc
MLInterfaces/inst/doc/MLInterfaces.R
MLInterfaces/inst/doc/MLInterfaces.Rnw
MLInterfaces/inst/doc/MLInterfaces.pdf
MLInterfaces/inst/doc/MLint_devel.R
MLInterfaces/inst/doc/MLint_devel.Rnw
MLInterfaces/inst/doc/MLint_devel.pdf
MLInterfaces/inst/doc/MLprac2_2.R
MLInterfaces/inst/doc/MLprac2_2.Rnw
MLInterfaces/inst/doc/MLprac2_2.pdf
MLInterfaces/inst/doc/xvalComputerClusters.R
MLInterfaces/inst/doc/xvalComputerClusters.Rnw
MLInterfaces/inst/doc/xvalComputerClusters.pdf
MLInterfaces/inst/extras
MLInterfaces/inst/extras/mlint08.Rnw
MLInterfaces/inst/formula
MLInterfaces/inst/formula/code.R
MLInterfaces/inst/formula/notes.txt
MLInterfaces/inst/formula/test.R
MLInterfaces/inst/oldFiles
MLInterfaces/inst/oldFiles/INIT.R
MLInterfaces/inst/oldFiles/MASSInterfaces.R
MLInterfaces/inst/oldFiles/classInterfaces.R
MLInterfaces/inst/oldFiles/clusterInterfaces.R
MLInterfaces/inst/oldFiles/cvB.R
MLInterfaces/inst/oldFiles/e1071Interfaces.R
MLInterfaces/inst/oldFiles/gbmB.R
MLInterfaces/inst/oldFiles/ipredInterfaces.R
MLInterfaces/inst/oldFiles/nnetInterfaces.R
MLInterfaces/inst/oldFiles/nonsyn.Rnw
MLInterfaces/inst/oldFiles/pamrInterfaces.R
MLInterfaces/inst/oldFiles/randTrain.R
MLInterfaces/inst/oldFiles/randomForestInterfaces.R
MLInterfaces/inst/oldFiles/rpartInterfaces.R
MLInterfaces/inst/oldFiles/silhouetteInterface.R
MLInterfaces/inst/oldFiles/smaInterfaces.R
MLInterfaces/inst/oldFiles/somInterfaces.R
MLInterfaces/inst/oldFiles/statsInterfaces.R
MLInterfaces/inst/unitTests
MLInterfaces/inst/unitTests/test_performance-analytics.R
MLInterfaces/man
MLInterfaces/man/MLIntInternals.Rd
MLInterfaces/man/MLearn-new.Rd
MLInterfaces/man/RAB.Rd
MLInterfaces/man/balKfold.xvspec.Rd
MLInterfaces/man/classifierOutput-class.Rd
MLInterfaces/man/clusteringOutput-class.Rd
MLInterfaces/man/confuMat-methods.Rd
MLInterfaces/man/confuTab.Rd
MLInterfaces/man/fs.absT.Rd
MLInterfaces/man/fsHistory.Rd
MLInterfaces/man/hclustWidget.Rd
MLInterfaces/man/learnerSchema-class.Rd
MLInterfaces/man/performance-analytics.Rd
MLInterfaces/man/planarPlot-methods.Rd
MLInterfaces/man/plspinHcube.Rd
MLInterfaces/man/predict.classifierOutput.Rd
MLInterfaces/man/projectLearnerToGrid.Rd
MLInterfaces/man/projectedLearner-class.Rd
MLInterfaces/man/raboostCont-class.Rd
MLInterfaces/man/varImpStruct-class.Rd
MLInterfaces/man/xvalLoop.Rd
MLInterfaces/man/xvalSpec.Rd
MLInterfaces/tests
MLInterfaces/tests/runTests.R
MLInterfaces/vignettes
MLInterfaces/vignettes/MLInterfaces.Rnw
MLInterfaces/vignettes/MLint_devel.Rnw
MLInterfaces/vignettes/MLprac2_2.Rnw
MLInterfaces/vignettes/doc.notes
MLInterfaces/vignettes/fuskmap.png
MLInterfaces/vignettes/xvalComputerClusters.Rnw