MLSeq: Machine learning interface for RNA-Seq data

This package applies several machine learning methods, including SVM, bagSVM, Random Forest and CART, to RNA-Seq data.

Author
Gokmen Zararsiz, Dincer Goksuluk, Selcuk Korkmaz, Vahap Eldem, Izzet Parug Duru, Turgay Unver, Ahmet Ozturk
Date of publication
None
Maintainer
Gokmen Zararsiz <gokmenzararsiz@hotmail.com>
License
GPL(>=2)
Version
1.14.1

View on Bioconductor

Man pages

cervical
Cervical Cancer Data
classify
Fitting Classification Models to Sequencing Data
confusionMat
Accessors for the 'confusionMat' slot of an MLSeq object
deseqTransform
Accessors for the 'deseqTransform' slot of an MLSeq object
method
Accessors for the 'method' slot of an MLSeq object
MLSeq-class
MLSeq object
MLSeq-package
Machine Learning Interface for RNA-Seq data
normalization
Accessors for the 'normalization' slot of an MLSeq object
predictClassify
Extract Predictions From 'classify()' objects
ref
Accessors for the 'ref' slot of an MLSeq object
trained
Accessors for the 'trained' slot of an MLSeq object

Files in this package

MLSeq/DESCRIPTION
MLSeq/NAMESPACE
MLSeq/R
MLSeq/R/class.R
MLSeq/R/classify.R
MLSeq/R/generics.R
MLSeq/R/methods.R
MLSeq/R/predictClassify.R
MLSeq/README
MLSeq/build
MLSeq/build/vignette.rds
MLSeq/data
MLSeq/data/cervical.rda
MLSeq/inst
MLSeq/inst/doc
MLSeq/inst/doc/MLSeq.R
MLSeq/inst/doc/MLSeq.Rnw
MLSeq/inst/doc/MLSeq.pdf
MLSeq/inst/extdata
MLSeq/inst/extdata/cervical.txt
MLSeq/man
MLSeq/man/MLSeq-class.Rd
MLSeq/man/MLSeq-package.Rd
MLSeq/man/cervical.Rd
MLSeq/man/classify.Rd
MLSeq/man/confusionMat.Rd
MLSeq/man/deseqTransform.Rd
MLSeq/man/method.Rd
MLSeq/man/normalization.Rd
MLSeq/man/predictClassify.Rd
MLSeq/man/ref.Rd
MLSeq/man/trained.Rd
MLSeq/vignettes
MLSeq/vignettes/MLSeq.Rnw