API for MLSeq
Machine Learning Interface for RNA-Seq Data

Global functions
Available-classifiers Man page
Classify Source code
ColorDendrogram Source code
CountDataSet Source code
FindBestTransform Source code
GetD Source code
GetDnb Source code
GoodnessOfFit Source code
MLSeq-class Man page
MLSeq-package Man page
MLSeqMetaData-class Man page
MLSeqModelInfo-class Man page
NullModel Source code
NullModelTest Source code
PoissonDistance Source code
Soft Source code
availableMethods Man page Source code
balanced.folds Source code
calcFactorQuantileGSD Source code
calcFactorRLEGSD Source code
calcFactorWeightedGSD Source code
calcNormFactorsGSD Source code
cervical Man page
classify Man page Source code
classify.continous Source code
classify.discrete Source code
classify.voom Source code
confusionMat Man page
confusionMat,MLSeq-method Man page
confusionMat,MLSeqModelInfo-method Man page
control Man page
control,MLSeq-method Man page
control<- Man page
control<-,MLSeq,list-method Man page
diag.disc Source code
discrete.train-class Man page
discreteControl Man page Source code
foldIndex Source code Source code
input Man page
input,MLSeq-method Man page
isModified Man page
isModified,MLSeq-method Man page
isModified<- Man page
isModified<-,MLSeq,logical-method Man page
isUpdated Man page
isUpdated,MLSeq-method Man page
isUpdated<- Man page
isUpdated<-,MLSeq,logical-method Man page
metaData Man page
metaData,MLSeq-method Man page
method Man page Man page
method,MLSeq-method Man page
method,MLSeqModelInfo-method Man page
method<- Man page
method<-,MLSeq,character-method Man page
modelDescription Source code
modelInfo Man page
modelInfo,MLSeq-method Man page
normalization Man page Man page
normalization,MLSeq-method Man page
normalization,MLSeqModelInfo-method Man page
normalization<- Man page
normalization<-,MLSeq,character-method Man page
onAttach Source code
permute.rows Source code
plot Man page
plot,MLSeq,ANY-method Man page
plot.MLSeq Man page Source code
preProcessing Man page
preProcessing,MLSeq-method Man page
preProcessing<- Man page
preProcessing<-,MLSeq,character-method Man page
predict Man page
predict,MLSeq-method Man page
predict.MLSeq Man page Source code
predict.voomDDA Source code
predict.voomNSC Source code
predictClassify Man page
predictNBLDA Source code
predictPLDA Source code
print,confMat-method Man page
print.confMat Man page Source code
print.poidist Source code
printAvailableMethods Man page Man page Source code
ref Man page Man page
ref,MLSeq-method Man page
ref,MLSeqModelInfo-method Man page
ref<- Man page
ref<-,MLSeq,character-method Man page
safe.exp Source code
se Source code
selectedGenes Man page
selectedGenes,MLSeq-method Man page
show Man page
show,MLSeq-method Man page
show,MLSeqMetaData-method Man page
show,MLSeqModelInfo-method Man page
show,discrete.train-method Man page
show,voom.train-method Man page
show.MLSeq Man page Source code
show.MLSeqMetaData Source code
show.MLSeqModelInfo Source code
show.discrete.train Source code
show.voom.train Source code
soft.shrink Source code
softmax Source code
trainNBLDA Source code
trainPLDA Source code
trainParameters Man page Man page
trainParameters,MLSeq-method Man page
trainParameters,MLSeqModelInfo-method Man page
trained Man page Man page
trained,MLSeq-method Man page
trained,MLSeqModelInfo-method Man page
transformation Man page Man page
transformation,MLSeq-method Man page
transformation,MLSeqModelInfo-method Man page
update Man page
update,MLSeq-method Man page
update.MLSeq Man page Source code
voom.train-class Man page
voomControl Man page Source code
voomDDA.train Source code
voomGSD Source code
voomNSC.train Source code
weighted.stats Source code
MLSeq documentation built on Nov. 1, 2018, 3:04 a.m.