create_mofa_from_Seurat: create a MOFA object from a Seurat object

Description Usage Arguments Value

View source: R/create_mofa.R

Description

Method to create a MOFA object from a Seurat object

Usage

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create_mofa_from_Seurat(
  seurat,
  groups = NULL,
  assays = NULL,
  slot = "data",
  features = NULL,
  save_metadata = FALSE
)

Arguments

seurat

Seurat object

groups

a string specifying column name of the samples metadata to use it as a group variable. Alternatively, a character vector with group assignment for every sample. Default is NULL (no group structure).

assays

assays to use, default is NULL, it fetched all assays available

slot

assay slot to be used such as scale.data or data (default).

features

a list with vectors, which are used to subset features, with names corresponding to assays; a vector can be provided when only one assay is used

save_metadata

logical indicating whether to incorporate the metadata from the Seurat object into the MOFA object

Value

Returns an untrained MOFA object


MOFA2 documentation built on Nov. 8, 2020, 7:28 p.m.