create_mofa_from_SingleCellExperiment: create a MOFA object from a SingleCellExperiment object

Description Usage Arguments Value

View source: R/create_mofa.R

Description

Method to create a MOFA object from a SingleCellExperiment object

Usage

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create_mofa_from_SingleCellExperiment(
  sce,
  groups = NULL,
  assay = "logcounts",
  save_metadata = FALSE
)

Arguments

sce

SingleCellExperiment object

groups

a string specifying column name of the colData to use it as a group variable. Alternatively, a character vector with group assignment for every sample. Default is NULL (no group structure).

assay

assay to use, default is logcounts.

save_metadata

logical indicating whether to incorporate the metadata from the SingleCellExperiment object into the MOFA object

Value

Returns an untrained MOFA object


MOFA2 documentation built on Nov. 8, 2020, 7:28 p.m.